Transcript Information: R_Transcript_483587.p1


Annotated TAIR IDAT5G06860.1
Annotated Gene Namepolygalacturonase inhibiting protein 1
Annotated Gene Symbol(s)PGIP1, ATPGIP1
Annotation TypeOrtholog
Chromosome Positionchr5:2132373-2133434 | Forward length=330
E-Value3.1E-102
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.7948076537769
Replicate 22.7577230397526
Replicate 34.0343209497701
Condition 2: 8 Hour
Replicate 15.2626336603035
Replicate 22.5364582387017
Replicate 33.0342990887811
Condition 3: 24 Hour
Replicate 12.8097614815996
Replicate 20.92171231184502
Replicate 34.5082138011818


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_483587.p1 GENE.R_Transcript_483587~~R_Transcript_483587.p1 ORF type:complete len:335 (+),score=18.46,LRR_8|PF13855.2|7.4e+03,LRR_8|PF13855.2|9.7e-08,LRR_8|PF13855.2|0.04,LRR_8|PF13855.2|96,LRRNT_2|PF08263.8|1.8e-08,LRR_1|PF00560.29|48,LRR_1|PF00560.29|0.29,LRR_1|PF00560.29|14,LRR_1|PF00560.29|9.4,LRR_1|PF00560.29|78,LRR_4|PF12799.3|4.3,LRR_4|PF12799.3|0.024,LRR_4|PF12799.3|0.0065,LRR_4|PF12799.3|33,LRR_4|PF12799.3|84 R_Transcript_483587:55-1059(+)
ATGGTCAGTCTTTACAACTTCATCACTTTCACACTCACCCTCATCCCCCTTTCAAGCCTGTGTTCCTCCACCGAGCTATGCAATCCCAAGGACAAGACAGTCCTTCTCAAGATCAAACACCACTTCAACAACGCCCCTTATTCATTCTCCACATGGAACCCCAAAACCGACTGCTGCAACAAATGGAGCAACGTTGCTTGCGATGACACGGCCAACCCAAGCCGTGTCACCTCGCTAACAATCGCCGGTGACGACAAAGTCACCGGCGAGATCCCGCCAGACGTTGGGGACTTACCTTACCTTACGTCCCTTCAAATCTTCTCCCTCCCGAACCTGACCGGACCCATCCCACCGTCCATTGCCAAGCTCACCAAGCTCAACTTCCTAGCACTAACCAGCAACAATCTCACCGGACCGGTCCCCGATTTCCTAGCCAACCTCACAAAGCTCCAGCTCCTTGACCTCAGCAGCAATGCTTTCACAGGAACCATACCTTCCTCTCTCTCGAACCTCCATGACGTCAGCACTCTTGATGTCAGTTTCAACCAGCTCATGGGTTCGATCCCCGAGAGCTTCGGCTCCTTCAAAACGGGCCTCCTTCTCCAGGTGGTGAACAACCAGATGTCCGGCCCACTCCCGAGGTCGTTGGGCCGGGCTAACCTCACCACAATCGACGTGTCCGGGAACCGGTTCACCGGGGACGCGTCGTTTTTGTTTGGGAGGGGGAAATTCTTGGAGAGTATAGTGTTGAGGGATAATAAATTCAAGTTTGATTTCACTAATGTGGACTTACCTCGAGGTTTGAAGCTCATTGATATGGCGGATAATATGATATATGGTTCGCTACCAAAACGGCTTGGTCAGTTGCCACTGAATTTCATTGATGTTAGTAACAACCAGCTTTGTGGACCGATCCCGACCGGCCGCCGGTTGAAGCAGTTCCGGCCCTATAGGTTTGAGCATAACAAGTGTCTTTGTGGTCCTCCATTACCTCCCTGCAAGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_483587.p1 GENE.R_Transcript_483587~~R_Transcript_483587.p1 ORF type:complete len:335 (+),score=18.46,LRR_8|PF13855.2|7.4e+03,LRR_8|PF13855.2|9.7e-08,LRR_8|PF13855.2|0.04,LRR_8|PF13855.2|96,LRRNT_2|PF08263.8|1.8e-08,LRR_1|PF00560.29|48,LRR_1|PF00560.29|0.29,LRR_1|PF00560.29|14,LRR_1|PF00560.29|9.4,LRR_1|PF00560.29|78,LRR_4|PF12799.3|4.3,LRR_4|PF12799.3|0.024,LRR_4|PF12799.3|0.0065,LRR_4|PF12799.3|33,LRR_4|PF12799.3|84 R_Transcript_483587:55-1059(+)
MVSLYNFITFTLTLIPLSSLCSSTELCNPKDKTVLLKIKHHFNNAPYSFSTWNPKTDCCNKWSNVACDDTANPSRVTSLTIAGDDKVTGEIPPDVGDLPYLTSLQIFSLPNLTGPIPPSIAKLTKLNFLALTSNNLTGPVPDFLANLTKLQLLDLSSNAFTGTIPSSLSNLHDVSTLDVSFNQLMGSIPESFGSFKTGLLLQVVNNQMSGPLPRSLGRANLTTIDVSGNRFTGDASFLFGRGKFLESIVLRDNKFKFDFTNVDLPRGLKLIDMADNMIYGSLPKRLGQLPLNFIDVSNNQLCGPIPTGRRLKQFRPYRFEHNKCLCGPPLPPCK*

Click here to download the sequence:
Link to NCBI Protein BLAST