Transcript Information: R_Transcript_48456.p1


Annotated TAIR IDAT5G09995.2
Annotated Gene Nameunknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G08530.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:3125185-3126302 | Reverse length=257
E-Value9E-47
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.5781018297625
Replicate 21.6607243267128
Replicate 32.3294987385918
Condition 2: 8 Hour
Replicate 11.7983968605321
Replicate 21.6423246550023
Replicate 31.8459265037682
Condition 3: 24 Hour
Replicate 11.556461506963
Replicate 22.8659375959507
Replicate 31.6075715306761


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_48456.p1 GENE.R_Transcript_48456~~R_Transcript_48456.p1 ORF type:5prime_partial len:177 (+),score=30.54 R_Transcript_48456:1-531(+)
ACTCCGGTAGCACAATTCCGTCTCCCACCTCGTCGATTCACCGTTCTTTCAACTCAATCTTCTCCAAAAGTCACCAATTCAACTGAACCCTCCTTATTGTCCTCTGAATTCACGTCTTCAGTTGGATCCCCTTCGCTTAATCTCTCTCCTTCTCAATGGACTCTTTCTCAACGCCATTTCACCGTCATAAATATCGCTGCTTGTGCCTTTGCAATTTCAGCAACTTGGCTCTTCTGTGCTGCAATTCCAACACTTTTGGCTTTTAAAAGAGCAGCAGAGTCAATGGAGAAGCTAATGGACGTTGCAAGAAAAGAGCTTCCGGGCACAATGGCAGCTGTTCGGTTATCTGGTATGGAAATCAGTGACTTGACAACGGAGCTGAGTGATTTGGGTCAGGAGATAACACAAGGTGTTAGAAGCTCTACTCGTGCAGTTCGTGTCACAGAAGAAAAATTGCATCATTTTGCCAACATGACTTCACGAGATGGTAACCAACACCAAAACAACCACCGCCGAGCCTGCATTAGCTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_48456.p1 GENE.R_Transcript_48456~~R_Transcript_48456.p1 ORF type:5prime_partial len:177 (+),score=30.54 R_Transcript_48456:1-531(+)
TPVAQFRLPPRRFTVLSTQSSPKVTNSTEPSLLSSEFTSSVGSPSLNLSPSQWTLSQRHFTVINIAACAFAISATWLFCAAIPTLLAFKRAAESMEKLMDVARKELPGTMAAVRLSGMEISDLTTELSDLGQEITQGVRSSTRAVRVTEEKLHHFANMTSRDGNQHQNNHRRACIS*

Click here to download the sequence:
Link to NCBI Protein BLAST