Transcript Information: R_Transcript_4870.p1


Annotated TAIR IDAT2G03670.1
Annotated Gene Namecell division cycle 48B
Annotated Gene Symbol(s)CDC48B
Annotation TypeOrtholog
Chromosome Positionchr2:1117595-1120361 | Forward length=603
E-Value1E-281
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 15.1978630533305
Replicate 23.5804949385409
Replicate 34.0579816602455
Condition 2: 8 Hour
Replicate 14.6620438227371
Replicate 24.9608578919187
Replicate 35.1389493643811
Condition 3: 24 Hour
Replicate 16.0815383384647
Replicate 24.4183548439733
Replicate 35.8343053883948


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_4870.p1 GENE.R_Transcript_4870~~R_Transcript_4870.p1 ORF type:complete len:604 (+),score=146.47,AAA|PF00004.25|9.2e-36,AAA|PF00004.25|1.6e-37,AAA_16|PF13191.2|3e-06,AAA_16|PF13191.2|0.0002,AAA_5|PF07728.10|0.0011,AAA_5|PF07728.10|0.024,AAA_33|PF13671.2|0.00016,AAA_33|PF13671.2|0.087,AAA_33|PF13671.2|8.5e+03,AAA_19|PF13245.2|0.0019,AAA_19|PF13245.2|0.05,AAA_19|PF13245.2|2.1e+02,RuvB_N|PF05496.8|0.0061,RuvB_N|PF05496.8|0.012,RuvB_N|PF05496.8|3.4e+02,AAA_22|PF13401.2|0.0037,AAA_22|PF13401.2|1.3,AAA_22|PF13401.2|8.5e+02,TIP49|PF06068.9|0.28,TIP49|PF06068.9|0.00012,Viral_helicase1|PF01443.14|0.00079,Viral_helicase1|PF01443.14|0.25,AAA_17|PF13207.2|0.022,AAA_17|PF13207.2|0.085,AAA_2|PF07724.10|0.00031,AAA_2|PF07724.10|13,AAA_25|PF13481.2|0.0012,AAA_25|PF13481.2|2.1 R_Transcript_4870:69-1880(+)
ATGGAGAGCAGTACCAGCAGCAATGAAACAACGAATTGGAAGGCTGAAGAAGCCATTGCTGGAAGCTCTGAAGCTCTCAAAGCTCTCAGAGAACTCGTTATATGGCCTTTGCTCTACTCTCGCGAAGCCCAACTCCTTGGTCTCCAATGGCCTCGCGGATTGCTTCTCTATGGTCCTCCCGGTACTGGCAAGACGAGCTTGGTGCGTGCGGTGGTCAGGGAAGGTGATGCCAAGCTAACAGTTGTTAGTCCACATACTGTCCTCAGAGCACATGTTGGAGAAAGTGAGAAAGCCCTCCGTCGAGCATTTTCAGAGGCATCATCTCATGCATTGTCAGGCAAGCCTTCAGTTGTCTTTATTGATGAGATTGATGCTGTCTGCCCTCGTCGTGATTCGAGAAGAGAACAAGAAGCTCGTTTGACCTCTCAGTTGCTTACACTAATGGATTCAATTAAGTCTTCAACAACTGCTCCACATTTTGTAGTTGTGGCATCAACTAACAGGATTGAAGCTCTTGACCCAGCACTGAGAAGATCTGGGCGATTTGATGCAGAAATTGAGGTCACAACTCCTAATGAGAGTGAACGTTTAGAAATACTAATGCTGTACACTAGGAACCTTCCACTTGACCCAGATGTTGATCTGCAAGCTATAGCTGCCTCATGTAATGGCTACGTGGGGGCTGATTTGGAAGCGTTATGCCGTGAGGCAGCCTTGTCTGCCATGAAAGATGAAGGTGATTGGTGGGTAAAGATAGACGACTGGAAACGTGCACGGGCTGTCATTGGTCCTAGCATAACTAGAGGTGTCACCATGGAAATCCCTAAGGTGTCTTGGGAGGAGATTGGAGGCCTAAATGAATTAAAGAGGAAGCTTCAGCGGGCTGTGGAGTGGCCTATTAAACATTCTGCTGCCTTTAAAAAGATGGGTATATCTCCCTCCCGTGGGGAGCTTCTGCATGGACCTCCAGGATGCTCAAAAACCACCCTTGCTAAAGCTGTTGCCCATGCTGCTCAAGCTTCCTTTTTCTCACTAAGTGGTGCAGAATTATATTCAATGTATGTTGGAGAGGGTGAGGCTTTGTTGCGGAATACATTCCGGAGAGCCCGGCTTGCAGCACCAAGCATCTTATTCTTTGACGAAGCAGATGTTGTTGCGGCAAAGAGAGTTAAGAGTGGCGGGAGTTCAAGTGGTAGTGCTTCAGTTGGGGAGAGGCTCCTCTCAACATTGCTGACTGAAATGGATGGTCTGGAGCAGACAAAAGGAATACTTGTCTTGGCTGCCACAAATCGAGCTGAGGCAATTGATGCTGCCCTTATGCGTCCAGGGCGCTTTGATTTGGTGCTCTATGTGCCACCTCCAGATCTGGAAGGGCGATATGAGATACTTCGAGTACATACAAGGAATATGAAACTGGGACCTGATGTTGATCTTAAACAAACAGCAAAGGATACTGAGCTTTTCACAGGGGCTGAACTGGAGGGTCTATGTAGAGAAGCTGGAATTGTTGCTTTGAGAGAGGACATGAATGCAACCATTGTATGCGATCGACATTTCCAAACAGTAAGAGAATCACTGAAGCCTGCATTAACAAGGGAAATAATTGAAAAGTACTCTAGTTTCATGAATAAATCGTCTCCCAAGGTTCATGTTACCAAGCCCACTGCCGAGCTACCCAGCAAATGCACACCAAAGCTCTCTGTTTCTTCGAGTGCAGTCACAATAGGTATTGTAAGCTTGTTGACTGCTTTTGCTGCCACATATTTGCCCTGGCATATAGATCGGAGTGGGACTAGAGCATCAGCCACTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_4870.p1 GENE.R_Transcript_4870~~R_Transcript_4870.p1 ORF type:complete len:604 (+),score=146.47,AAA|PF00004.25|9.2e-36,AAA|PF00004.25|1.6e-37,AAA_16|PF13191.2|3e-06,AAA_16|PF13191.2|0.0002,AAA_5|PF07728.10|0.0011,AAA_5|PF07728.10|0.024,AAA_33|PF13671.2|0.00016,AAA_33|PF13671.2|0.087,AAA_33|PF13671.2|8.5e+03,AAA_19|PF13245.2|0.0019,AAA_19|PF13245.2|0.05,AAA_19|PF13245.2|2.1e+02,RuvB_N|PF05496.8|0.0061,RuvB_N|PF05496.8|0.012,RuvB_N|PF05496.8|3.4e+02,AAA_22|PF13401.2|0.0037,AAA_22|PF13401.2|1.3,AAA_22|PF13401.2|8.5e+02,TIP49|PF06068.9|0.28,TIP49|PF06068.9|0.00012,Viral_helicase1|PF01443.14|0.00079,Viral_helicase1|PF01443.14|0.25,AAA_17|PF13207.2|0.022,AAA_17|PF13207.2|0.085,AAA_2|PF07724.10|0.00031,AAA_2|PF07724.10|13,AAA_25|PF13481.2|0.0012,AAA_25|PF13481.2|2.1 R_Transcript_4870:69-1880(+)
MESSTSSNETTNWKAEEAIAGSSEALKALRELVIWPLLYSREAQLLGLQWPRGLLLYGPPGTGKTSLVRAVVREGDAKLTVVSPHTVLRAHVGESEKALRRAFSEASSHALSGKPSVVFIDEIDAVCPRRDSRREQEARLTSQLLTLMDSIKSSTTAPHFVVVASTNRIEALDPALRRSGRFDAEIEVTTPNESERLEILMLYTRNLPLDPDVDLQAIAASCNGYVGADLEALCREAALSAMKDEGDWWVKIDDWKRARAVIGPSITRGVTMEIPKVSWEEIGGLNELKRKLQRAVEWPIKHSAAFKKMGISPSRGELLHGPPGCSKTTLAKAVAHAAQASFFSLSGAELYSMYVGEGEALLRNTFRRARLAAPSILFFDEADVVAAKRVKSGGSSSGSASVGERLLSTLLTEMDGLEQTKGILVLAATNRAEAIDAALMRPGRFDLVLYVPPPDLEGRYEILRVHTRNMKLGPDVDLKQTAKDTELFTGAELEGLCREAGIVALREDMNATIVCDRHFQTVRESLKPALTREIIEKYSSFMNKSSPKVHVTKPTAELPSKCTPKLSVSSSAVTIGIVSLLTAFAATYLPWHIDRSGTRASAT*

Click here to download the sequence:
Link to NCBI Protein BLAST