Transcript Information: R_Transcript_48726.p2


Annotated TAIR IDAT5G13190.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: LPS-induced tumor necrosis factor alpha factor (InterPro:IPR006629); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:4204987-4206205 | Reverse length=134
E-Value4.3E-72
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 128.417783522317
Replicate 233.443209046319
Replicate 334.703021627704
Condition 2: 8 Hour
Replicate 126.978438025707
Replicate 233.340476517696
Replicate 335.759759844954
Condition 3: 24 Hour
Replicate 133.680615393937
Replicate 231.035843349016
Replicate 331.586448081091


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_48726.p2 GENE.R_Transcript_48726~~R_Transcript_48726.p2 ORF type:complete len:167 (+),score=24.44,zf-LITAF-like|PF10601.5|1.3e-11 R_Transcript_48726:1605-2105(+)
ATGTCGAAGAATGAGGAACCTGTGATGGGGATACCCTACCCCGGCGCTGGAGGCTATCCGGCGGGCCCACCACCGGCAATGTACCCACCACAGCCTCATCCACAACCACAACAACAATACAACAACAACTATTACCATGTGGGTGAAAACCCTTATCAAGCAGGGATGATCCCTCCGAATGCCATATTTGGAGATCCAAAAGGGGTTCCCATTCATCAGACCTTCTACAGGGATACTCCTGCTCCTTTCAATTGCGTTCACTGCGGCAACTCTGGCCTCACCACTCTCAAGTCAAAGCCTAGTCTGGCTGCAGTGGTTGGTTGTATGATGCCAATGATGCTAGGGGTTTGCTTTCTTTGCCCTTCCATGGACTGCCTTTGGCATAAGTATCATTACTGCCCTAGCTGTGGGGAAAAGGTTGCTGCTTTTGAGAAATCAGATCCTTGTGTCGTCATGGATCCGACCAATTGGGCACAAGAAAGTTTTGCATTGCGCAGCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_48726.p2 GENE.R_Transcript_48726~~R_Transcript_48726.p2 ORF type:complete len:167 (+),score=24.44,zf-LITAF-like|PF10601.5|1.3e-11 R_Transcript_48726:1605-2105(+)
MSKNEEPVMGIPYPGAGGYPAGPPPAMYPPQPHPQPQQQYNNNYYHVGENPYQAGMIPPNAIFGDPKGVPIHQTFYRDTPAPFNCVHCGNSGLTTLKSKPSLAAVVGCMMPMMLGVCFLCPSMDCLWHKYHYCPSCGEKVAAFEKSDPCVVMDPTNWAQESFALRS*

Click here to download the sequence:
Link to NCBI Protein BLAST