Transcript Information: R_Transcript_48782.p1


Annotated TAIR IDAT1G15420.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Small-subunit processome, Utp12 (InterPro:IPR007148); Has 764 Blast hits to 656 proteins in 193 species: Archae - 0; Bacteria - 42; Metazoa - 237; Fungi - 154; Plants - 85; Viruses - 23; Other Eukaryotes - 223 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:5301794-5303296 | Reverse length=278
E-Value8.4E-75
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 121.578112756547
Replicate 223.763254734725
Replicate 325.659097539876
Condition 2: 8 Hour
Replicate 118.127132577224
Replicate 217.940707523742
Replicate 321.458299376814
Condition 3: 24 Hour
Replicate 123.580693470316
Replicate 225.645649872764
Replicate 327.741393149672


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_48782.p1 GENE.R_Transcript_48782~~R_Transcript_48782.p1 ORF type:5prime_partial len:258 (+),score=64.80,Utp12|PF04003.8|4.1e-12 R_Transcript_48782:1-774(+)
TTGAAGGTGAGAAGGGTTCCAAGGAAAAAATCAAGGAAAAAGAGAACAGCACCTGAACCTGTTGCTCTACCTACAAAGAACCTTGCTCAAGATAATGGAGAAGATGCAAATGGGATTCAGATTGATGACAATGAGCCTACTATGGCTGACAAACTTGCAAGTTTAGATCTCGTAAATAAAGATAATGGTGAAGCCATGGAAAGGCAAGATCCTTCTCTTACGCAGCCTCCTAGTGCAGACTCTGTTCATGTTTTGCTAAAACAAGCATTGCATGCGGATGACCACGCTCTTCTCTTAGAGTGCTTGTACAATCAGGATGACAAGGTTATCACAAAATCAGTCTCACTCTTAAATCCGATTGACATTTTCAAGCTTTTGGGAGCACTTTTATCTATTATTCAGTCAAGGGGTGCAGTTTTGGTGTGTGCTCTACCATGGCTCCGGAGTTTACTGCTTCAGCATTCTAGCAGGATAATGTCCCAAGAGTCTTCTTTAGCCGCCCTTAATTCCTTATACCAGCTTATTGAATCTAGGGTGGCAACCTTTAATCCCACTCTACAATTGGCTAGTAGTTTGGATTTCTTGTTTGGGTCTGAGATTGACGACGATGATGGACATGGTGAGTACGAGTCAATAACTCCAGTTATCTATGAAGATAAAGATGATACCGAGGAAGAGGAATCTGAAGATGTCATGGACACTGATGAAGAGAGTAAAGAACCAGAAGAGTTCAGTGGCATTAGTGATATTGATGAAAGCGAAGACTTAGAGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_48782.p1 GENE.R_Transcript_48782~~R_Transcript_48782.p1 ORF type:5prime_partial len:258 (+),score=64.80,Utp12|PF04003.8|4.1e-12 R_Transcript_48782:1-774(+)
LKVRRVPRKKSRKKRTAPEPVALPTKNLAQDNGEDANGIQIDDNEPTMADKLASLDLVNKDNGEAMERQDPSLTQPPSADSVHVLLKQALHADDHALLLECLYNQDDKVITKSVSLLNPIDIFKLLGALLSIIQSRGAVLVCALPWLRSLLLQHSSRIMSQESSLAALNSLYQLIESRVATFNPTLQLASSLDFLFGSEIDDDDGHGEYESITPVIYEDKDDTEEEESEDVMDTDEESKEPEEFSGISDIDESEDLE*

Click here to download the sequence:
Link to NCBI Protein BLAST