Transcript Information: R_Transcript_48879.p1


Annotated TAIR IDAT1G07040.1
Annotated Gene Nameunknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G27030.1); Has 540 Blast hits to 538 proteins in 187 species: Archae - 0; Bacteria - 333; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 140 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:2161225-2163035 | Reverse length=371
E-Value6.3E-166
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 143.233172982955
Replicate 235.931813083562
Replicate 339.55544894181
Condition 2: 8 Hour
Replicate 146.131874423805
Replicate 2103.44789408487
Replicate 3116.86268899414
Condition 3: 24 Hour
Replicate 136.270968635522
Replicate 227.000639105732
Replicate 334.24184728079


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_48879.p1 GENE.R_Transcript_48879~~R_Transcript_48879.p1 ORF type:complete len:388 (+),score=87.76,DUF1338|PF07063.9|1.7e-76 R_Transcript_48879:166-1329(+)
ATGATCTCATCTTCAATTATCAGGTTCAAGCCTTCAACACCATTATCATTAATACCATCATCTTTCCATTCAATTTCATCTTCCTTTTCTGAGTTTTCAATCAGTTCATCAAAGTGCATGTCTTGGAAAGGCAAACATGATCTGGGTAACCCAATTTCATTGACTAATAACAATCACAGAAGCTTTTGTTTAAAGGCTTCTTCTTCTTCTTCTTCAGAATCCCAGTTTCAAGATGGGTTTAATGGGTCTTCTTCTTTTCAGGGATCAGAATCATTCTTCAGAAGCGTTTTGGGGAGTATGGAGACTGTGTACTTGAACAGGAATCCAACTGCCAAAGCAGTCTTCGAGCTTGTTCATTCTGCTGGAAACGATAGGATATGCTATGATCATTTCGCATTTCGCACTTTTGGGGTGGATGGTCATGGAATTGATTCGATGGCTAAAATCTTCCTTGATTGTGGCTACACTCAAAAAGATGAACTGCGGTTTCCAGCAAAGAAGTTGAAAGCATATTGGTTCTCACCTCCTGCTGTTTCCTCTGAAGAAGGAAGTGGCATTAATGGGCCTTTGCCTAGGGTGTTTATATCTGAGCTACTTGTAGACCAGATGAGTTCAGAGGCTCAGGACATTATCAGAAAGTACACAGGAAAGTCAGGTGGTTTGAACAAGTATGCATCTCTTGCTAGTGCATTGGGGTCGTTAACTTGGGAGAAGCCCTTGTATTCTGAATTCCAAAGCTTGAGCAGGGAAAGTGAGTATGCAGCCTGGACTCTGGTGAATCGATATGCCTTGAATCATGTCACTATTTCTACTCACCGGTTGAAGTCTCACTTGAGAAGTGTCAAGAATCTTAATCAGTTCATCGAAGACAATGGGTTCAAGTTGAATTCTGAAGGAGGGGTTCTAAAAGTTAGTCCTGATGGCTTCTTGCTGCAAAGTTCGACTGTGGCAGATTCAATGTCCTTCCAATTTTCAGATGGTGTAACAGAAACTGTTCCTTGTTCATACATAGAGTTTGCTGAAAGGCTTGTGCTTCCACAATTCCAGAATATACCTGATGAGGAGGTCAAGGAGTTCCATCGCCGAGATGGATTTGAGGTTGGGAATGCCGATAAGATCTTTGAGAGCACATCGAAAGATCAACTAACGCGAAGAGCTGCTTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_48879.p1 GENE.R_Transcript_48879~~R_Transcript_48879.p1 ORF type:complete len:388 (+),score=87.76,DUF1338|PF07063.9|1.7e-76 R_Transcript_48879:166-1329(+)
MISSSIIRFKPSTPLSLIPSSFHSISSSFSEFSISSSKCMSWKGKHDLGNPISLTNNNHRSFCLKASSSSSSESQFQDGFNGSSSFQGSESFFRSVLGSMETVYLNRNPTAKAVFELVHSAGNDRICYDHFAFRTFGVDGHGIDSMAKIFLDCGYTQKDELRFPAKKLKAYWFSPPAVSSEEGSGINGPLPRVFISELLVDQMSSEAQDIIRKYTGKSGGLNKYASLASALGSLTWEKPLYSEFQSLSRESEYAAWTLVNRYALNHVTISTHRLKSHLRSVKNLNQFIEDNGFKLNSEGGVLKVSPDGFLLQSSTVADSMSFQFSDGVTETVPCSYIEFAERLVLPQFQNIPDEEVKEFHRRDGFEVGNADKIFESTSKDQLTRRAA*

Click here to download the sequence:
Link to NCBI Protein BLAST