Transcript Information: R_Transcript_48883.p1


Annotated TAIR IDAT5G44180.1
Annotated Gene NameHomeodomain-like transcriptional regulator
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:17783172-17789872 | Forward length=1694
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 126.799029296457
Replicate 220.835144601699
Replicate 323.321168703978
Condition 2: 8 Hour
Replicate 121.921829747177
Replicate 225.67088079794
Replicate 326.391486494115
Condition 3: 24 Hour
Replicate 129.490209613219
Replicate 222.86540272044
Replicate 327.479629239581


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_48883.p1 GENE.R_Transcript_48883~~R_Transcript_48883.p1 ORF type:complete len:1824 (+),score=549.06,DDT|PF02791.13|1.9e-18,Homeobox|PF00046.25|3.7e-16,HARE-HTH|PF05066.9|1.1e-14,WHIM3|PF15614.2|2.7e-10,WHIM2|PF15613.2|1.6e-05 R_Transcript_48883:1472-6943(+)
ATGGAAGGGGGTTCTGAAGGAGAGAAGAAACCCCCTCAAAGTGGTGGTGGTGGTGAGCCTAAGGTTAAGAGAAAGATGAAGACTGCTTCTCAGCTTGAGGTTCTTGAGAAAACTTATCAAGTTGAGACATACCCATCAGAATCTTTGAGGGCAGAGCTTTCAGCCCAGTTAGGGTTAACAGATCGACAATTGCAGATGTGGTTTTGTCACAGGCGGTTGAAGGACAAGAAGGTGACGTCAGGAGGATCGTCGGGAAAGCGGTCCAGGAAGGGGGAGGCGTCACCGGCCACGGCTCCAACAACCTCCACCCCAGCTCCTGGCCCCACACCTCCTCTCCCGCCACCTCCTGTGGTGGGTAAGGAGGAGATGCTGGGGGTTGAGTTGGGGAATGAGCATGGGTCCGGTTCTAATTCCGGTTCCAGCCCTTATAGGCACATGGACCCTCGGCATGGGGGCTATGCTCCTCGCCCTGGGGTTGCTGTGCCTAGGATTAGTGGACATGGGAGGTACTATGAGCCTCCTCCTCAGTCTATAGCTGAGCTTCGGGCTATTGCTTTTGTGGAGGCACAGCTTGGTGAGCCTTTGAGGGAAGATGGCCCTGCTCTTGGGATGGAGTTTGATCCTTTGCCTCCTGGTGCTTTTGGTGCTCCAATTGCAACATCAACGGCACCACAAAAGCCAGTTGGACGAGGTTATGAAGCTTCAATGTATGAGCGTACGGATGCTAAGCCTGTCAAGGGTCCTGGGAGAGCTGTACATGAATACCAATTTCTTCCAGAGCAACCAACTGTTAGAAGTGATTCTTATGAAAGAGTTGCTCAATCTCATTACTATGGCTCACCTTCTGATGGGCCAGGGACTAAGACTCCTCCAGTTTCTGGTGGGCGCTCGTACAGGCATGGTTACGAGGAAGCACCTGCGGCATATGGTATTTCAGGTCAGGTTCCAAGTCTGAGCTTAATGTCCCAACAGGGCAAGACTGGGCCCCCAGTTCCTTCTGCTTCAGGAGACTATGATAGCGTTGCACGAAAATCTCCCTATATGGGTATGGAATCACCTTACAGTGCACATCCAATCACGGGACTAGAAAATGCACTCGTGCCATCTGAAAGACGTATCATACAAGAGGACGATGTCGGGAGGGTTGAGAGGAAGCGGAAGAGCGAAGAAGCAAGAATAGCCAAGGAAATTGAAGCCCATGAGAAAAGAATGAGGAAAGAGTTAGAGAAGCAAGATATTCTCAGGCGTAAGAGAGAGGAACAAATGAGAAAAGAAATGGAGAGGCAAGACCGTGAGCGCAGGAAGGAAGAGGAGAGGCTGTTACGTGAAAAGCAGCGAGAAGAGGAACGATACCAGAGGGAACAAAGACGTGAAATGGAAAGAAGAGAGAAGTTTTTGCTGAAAGAGTCTATTAGGGCTGAGAAAATGAGGCAAAAGGAAGAGCTTCGCAGAGAAAGAGAAGCAGCAAGACAGAAAGCTGCTAATGATAGAGCTGTTGCTCGCAGACTTGCTAAAGAGTCAATGGAGCTTATTGAAGATGAGAGATTGGAGCTTATGGAAATAGCTGCTTTAAAGAAGGGCTTGCCATCCATCTTGTCTCTTGATAGTGAAACTTTACAAAATCTTGATTCATTTAGAGATATGCTGCGGTTGTTCCCACCAAATTCTGTGCATTTGAAGAAGCCTTTTGCAATACAGCCATGGATGGGTTCTGAAGAGAATGTTGGCAATCTTCTGATGGTTTGGAGATTTCTGATAACTTTTGCTGATGTTCTTGGATTGTGGCCGTTCACTCTTGATGAGTTTGTACAAGCATTTCATGATTATGATCCTCGATTACTAGGAGAAATACATGTAGCTCTTCTGCGAACAATAATAAAGGACATTGAGGATGTTGCTAGAACACCTTCATCTGGGCTGGGTGCAAATCAGAATAGTGCAGCTAATCCTGGTGGTGGACATCCACATATAGTTGAAGGGGCATATGCTTGGGGCTTTGATATACGCAGCTGGCACCGCAACTTGAACCCAATGACATGGCCAGAAATTCTGCGGCAGTTTGCTCTATCTGCAGGTTTTGGGCCAAAACTGAAGAAAAGGAATTCTGAACAACCATATTCTCGTGATGACAATGAGGGTAATGATGGTATCAACATAATATCTAATTTGCGTACTGGAGCAGCAGTTGAAAATGCTGTTGCTATTATGAGAGAGAGGGGATACTCTAATCCACGGAGATCAAGGCACAGATTAACCCCTGGCACAGTTAAGTTTGCGGCATTTCATGTTCTTTCTCTTGAGGGAGGCAATGGTCTAAATATCTTGGAAGTTGCTGATAGGATACAGAAATCTGGACTCCGTGACCTAACCACTAGCAAGACACCAGAAGCGTCTATTGCCGCAGCATTGTCAAGGGATACAAAACTTTTTGAGAGAACTGCTCCTTCAACATATTGTGTACGTTCTCCTTACAGGAAGGATCCTGCTGATGCAGAGGCTATACTGTCTACAGCTAGAGAGAAAATTAGGGTGTTTAAGAGCGGGTTTGTTGACGGGGTGGAGGCCGATGTCGATGGGGTGGAGGCTGATGATGTCGAGAAAGATGAAGAATCTGAAAGTGATACTGCTGAAGATCCTGAGGTTGATGATTTGGGTGCTGAGCTAACCCCAAATAAAGATGAAGATCCTAATTATGATGTGAACAGATCTGAACCAGATACTCGGTCTGGTGATGGAATTGGGGATTTGCATGCTAGTGCAGTGGCTAACACACCTAATGGAGTTGGGAATGCTGTTGAAGAATTATCTCCAGTTCATGTGGAAAGCTTTAAGGAGCTGAATGATAATGGATGTTCTGTTGAGGAATCTATGGATGTTAGTGGAATGTGCCTTGAAGGAGGTAACACTGATCATGAAGACACTGATATTGATGAAAGCTGTCCTGGTGAACCTTGGGTTCAAGGACTTATGGAGGGGGAATACTCTAATCTTAGTGTGGAAGAGCGCCTTAATGCTCTTGCTTCCCTAATTGGTGTGGCTACTGAGGGAATCTCAATTCGAATTGTTCTGGAGGAACGTCTAGAAGCAGCAAATGCTCTGAAGAAGCAAATGTGGGCAGAAGCACAACTTGACAAACGACGTCTGAAAGAGGAATATCTAATGAAGACACCCTATCCAATGTTCCCCCCCAGCAAGATGGAATTGATGTCTGCTTCTGATTGTCGGCGGAGTCCGTTGGTCGCCTCAGATGAAAATAATAATGAGACATTGATGAGCACTGCAGCACAGCAAAAACCTTTTAATGATCCTAACAATGATAATAATACACTCGCTGATCTGACGGAGAAGAATTTAACTCCTGATTTCTCTGTTGGTCCTGAAAATCTTGCTCTGCAACAATCTGTTTATGCTGCTGAGAAATCTCGTGCTCAGATGAAGTCTTATATAGGACACAAAGCTGAAGAAATGTATGTTTATAGGTCCTTGCCTCTTGGTCAGGATCGCCGTCGCAACAGATACTGGCAGTTTATAGCATCGGCTTCTTGCAATGATCCTGGTGCTGGAAGAATTTTTGTTGAGTTGTATAATGGTGGTTGGAGGCTCATTGACTCTGAAGAGGCTTTTGATGCTCTGCTTGGTTCCCTGGATGTACGTGGGGTTAGAGAGTCCCATTTGCATGCATTGCTCCAAAAGGTTGAGCCTCTGTTCAAGGAGTCTATTAGGAAGAAGTTAGATAGCAGGGGTGGTGGACACAATGATAAATCTGTCAAAACAGAAGCTCCTGAAGTTCCTTCCAACCCTGAATGTAGTGGTGGTACAGATAGCCCAAACAGTACTGTTTGTGCTTCTAATTCAGAGACACCAGAACCATCAACATCTTTTCAGATTGAGAGTGGAAGAAACAGCCTGGAAATAAAGAATGCCTTGAGGCGGTACAAAAATTTTGAGGACTGGATGTGGAGAGAATGTTTCTCCTCCATTTTATGCGCCACAAAGTATGGGAAGAAACGTTGCACACAATTGGTGCACATGTGTGATTCATGCCATGATCTTTATTCTTTTGAAGACAACCACTGTCCTACTTGCAATTGCACAGTATTTGAGAAGAAATTCAATTTCTCTGAGGACATTGCACAGTGTGAAGAGACTAAGGTCCATCAGGAGCGGACCCTTCATCGTTCAGATTATTCTCCGCCAAGGATAAGACTGCTCAAGGCCCTATTAGGTCTGGTGGAGGTTTGCATTCCTCATGAAGCCCTCCAACCTTTCTGGTCAAATGGCTACCGGAAGTCCTGGGGCATGAAGCTATATATGTCATCATCAGCAGAAGATCTTCTTAAGGTTCTGACACTGCTTGAGGGAGCAATAAAGAGGGACTTCCTGACTTCAAACTTCCAGACTACCAGTGAATTATTGATTTCTGGTAATAGCGTAGGATCTTTTATCAGTGATGCCTCCAAACTCGAGAGCGTGTCTGTTCTTCCTTGGATACCACAGACAACTTCTGCAGTGGCTTTGCGGCTTATGGAACTTGATTCAGCTGTTTCATACCTGCCAGATCAGAAAATGGAGACTTCAAAAGATACAGAGGCGAGGCATTTCATTAAGCTTCCCTCCAAATACACCGTTGTTAGGAATATCCAAGATGACGAGCTTGCTGGTATTCATGGTGAGCAACAACAAGAAGATTCTTGGCTTGAAGCAGGGAGTGAACACCTTGGTTTTGCCTCTGTACGTGGCCGAGGACGGGGTCGTGGCAGCCGAACCCGTGGTGGGAGATCCCAGAGGAGGGTTACTGGGTTAAGGGGTGAACCTAGCAGAAGTGTAGCCTCCAGTGAGAGGCTAGGTCAGGTACTTGGTGGGTGGAAGGGCCGCAATACTCGCGGCAAAGGAGGTCGAAAACGCGGTCGCCGCTCTGTCAGAAGTAGGCAGAAACCTGGAAAGAAGCCAACCACCGTAGCTGGTGGGAGGAGTCTGCCTGAACCGGTTATCTATGAAAAATCTCCTCCTGGATTCTCAGCGAGAGACGAATGGAATGATGAAGATAGCAGGCAAATGCAGGTGGAGGGGATCGATGTCAATGATGATAGTAATTCCGAGAGATCCGAGTATGAAGATGATAATGGCCAAGCCTCAGGGGATGAATATGATGACATGGCAATTGATGACTATGCTGCCGTGTATAATGGCAAACCAAGTCATTTGATGGATGGAAGTGATTATAATGTAGATGACGATGAAGAGGGTGATGACCGTGATGATGTGGGAGACGACGATGATCGTTATGATGTGGACGAAGATGATGTAGATGTTGATGGTGCGGATTACGAGCGAGGAGATTTAGATGTTGGAGGATATTTAAATGCTGACACGGATGATGACGGCAACGGGGATGAAGATGGGGAGCGTGATGGAGACCAGGATGATGATACTTCTGATTCGGGATCAACTGATTATAGTAGTGAGGAATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_48883.p1 GENE.R_Transcript_48883~~R_Transcript_48883.p1 ORF type:complete len:1824 (+),score=549.06,DDT|PF02791.13|1.9e-18,Homeobox|PF00046.25|3.7e-16,HARE-HTH|PF05066.9|1.1e-14,WHIM3|PF15614.2|2.7e-10,WHIM2|PF15613.2|1.6e-05 R_Transcript_48883:1472-6943(+)
MEGGSEGEKKPPQSGGGGEPKVKRKMKTASQLEVLEKTYQVETYPSESLRAELSAQLGLTDRQLQMWFCHRRLKDKKVTSGGSSGKRSRKGEASPATAPTTSTPAPGPTPPLPPPPVVGKEEMLGVELGNEHGSGSNSGSSPYRHMDPRHGGYAPRPGVAVPRISGHGRYYEPPPQSIAELRAIAFVEAQLGEPLREDGPALGMEFDPLPPGAFGAPIATSTAPQKPVGRGYEASMYERTDAKPVKGPGRAVHEYQFLPEQPTVRSDSYERVAQSHYYGSPSDGPGTKTPPVSGGRSYRHGYEEAPAAYGISGQVPSLSLMSQQGKTGPPVPSASGDYDSVARKSPYMGMESPYSAHPITGLENALVPSERRIIQEDDVGRVERKRKSEEARIAKEIEAHEKRMRKELEKQDILRRKREEQMRKEMERQDRERRKEEERLLREKQREEERYQREQRREMERREKFLLKESIRAEKMRQKEELRREREAARQKAANDRAVARRLAKESMELIEDERLELMEIAALKKGLPSILSLDSETLQNLDSFRDMLRLFPPNSVHLKKPFAIQPWMGSEENVGNLLMVWRFLITFADVLGLWPFTLDEFVQAFHDYDPRLLGEIHVALLRTIIKDIEDVARTPSSGLGANQNSAANPGGGHPHIVEGAYAWGFDIRSWHRNLNPMTWPEILRQFALSAGFGPKLKKRNSEQPYSRDDNEGNDGINIISNLRTGAAVENAVAIMRERGYSNPRRSRHRLTPGTVKFAAFHVLSLEGGNGLNILEVADRIQKSGLRDLTTSKTPEASIAAALSRDTKLFERTAPSTYCVRSPYRKDPADAEAILSTAREKIRVFKSGFVDGVEADVDGVEADDVEKDEESESDTAEDPEVDDLGAELTPNKDEDPNYDVNRSEPDTRSGDGIGDLHASAVANTPNGVGNAVEELSPVHVESFKELNDNGCSVEESMDVSGMCLEGGNTDHEDTDIDESCPGEPWVQGLMEGEYSNLSVEERLNALASLIGVATEGISIRIVLEERLEAANALKKQMWAEAQLDKRRLKEEYLMKTPYPMFPPSKMELMSASDCRRSPLVASDENNNETLMSTAAQQKPFNDPNNDNNTLADLTEKNLTPDFSVGPENLALQQSVYAAEKSRAQMKSYIGHKAEEMYVYRSLPLGQDRRRNRYWQFIASASCNDPGAGRIFVELYNGGWRLIDSEEAFDALLGSLDVRGVRESHLHALLQKVEPLFKESIRKKLDSRGGGHNDKSVKTEAPEVPSNPECSGGTDSPNSTVCASNSETPEPSTSFQIESGRNSLEIKNALRRYKNFEDWMWRECFSSILCATKYGKKRCTQLVHMCDSCHDLYSFEDNHCPTCNCTVFEKKFNFSEDIAQCEETKVHQERTLHRSDYSPPRIRLLKALLGLVEVCIPHEALQPFWSNGYRKSWGMKLYMSSSAEDLLKVLTLLEGAIKRDFLTSNFQTTSELLISGNSVGSFISDASKLESVSVLPWIPQTTSAVALRLMELDSAVSYLPDQKMETSKDTEARHFIKLPSKYTVVRNIQDDELAGIHGEQQQEDSWLEAGSEHLGFASVRGRGRGRGSRTRGGRSQRRVTGLRGEPSRSVASSERLGQVLGGWKGRNTRGKGGRKRGRRSVRSRQKPGKKPTTVAGGRSLPEPVIYEKSPPGFSARDEWNDEDSRQMQVEGIDVNDDSNSERSEYEDDNGQASGDEYDDMAIDDYAAVYNGKPSHLMDGSDYNVDDDEEGDDRDDVGDDDDRYDVDEDDVDVDGADYERGDLDVGGYLNADTDDDGNGDEDGERDGDQDDDTSDSGSTDYSSEE*

Click here to download the sequence:
Link to NCBI Protein BLAST