Transcript Information: R_Transcript_489276.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value7E-13
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.47616419881875
Replicate 20
Replicate 30.19918902257524
Condition 2: 8 Hour
Replicate 10.21292056475865
Replicate 20
Replicate 30
Condition 3: 24 Hour
Replicate 10.39926621265572
Replicate 20
Replicate 30.38065573368517


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_489276.p1 GENE.R_Transcript_489276~~R_Transcript_489276.p1 ORF type:3prime_partial len:115 (+),score=27.01,UBN2_3|PF14244.2|1.6e-27 R_Transcript_489276:154-495(+)
ATGGCACCTAGAGGTCAAATTACATATGATATTCAAAATCCATTGTTTCTACATCCTAGCGATGGTCCTGGTTCTCTCAATATTGAGGAAAAGCTTCAAGGAGCCTCCAATTATCGCTCATGGAGAAGGAGTGTGGAGATTGCGTTGGCTACCAAAAGAAAGCTTGGATTCATTACAGGAACTCTTGAACGTTCTGAAGATGACAATGATAAAGCTGAGCAGTTTGACACCTGCAACAGTATGGTAATTGCTTGGCTCTTGAATTCTGTTTCAGACTCAATTCGTAAATCTGTTCTGTTTGTGGATTCTGTTAGAGAAATATGGCAGCAACTAGAAACCAGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_489276.p1 GENE.R_Transcript_489276~~R_Transcript_489276.p1 ORF type:3prime_partial len:115 (+),score=27.01,UBN2_3|PF14244.2|1.6e-27 R_Transcript_489276:154-495(+)
MAPRGQITYDIQNPLFLHPSDGPGSLNIEEKLQGASNYRSWRRSVEIALATKRKLGFITGTLERSEDDNDKAEQFDTCNSMVIAWLLNSVSDSIRKSVLFVDSVREIWQQLETR

Click here to download the sequence:
Link to NCBI Protein BLAST