Transcript Information: R_Transcript_49267.p1


Annotated TAIR IDAT1G56710.1
Annotated Gene NamePectin lyase-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:21258206-21259922 | Reverse length=434
E-Value5E-184
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 129.419914709536
Replicate 216.984812125379
Replicate 323.279204874139
Condition 2: 8 Hour
Replicate 14.678193709433
Replicate 24.2722010021777
Replicate 35.9767498384201
Condition 3: 24 Hour
Replicate 116.145124595093
Replicate 211.924184684743
Replicate 319.307446817304


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_49267.p1 GENE.R_Transcript_49267~~R_Transcript_49267.p1 ORF type:complete len:492 (+),score=63.75,Glyco_hydro_28|PF00295.13|2.1e-88,Pectate_lyase_3|PF12708.3|6.7e-08,Beta_helix|PF13229.2|9.2e-09,Beta_helix|PF13229.2|11 R_Transcript_49267:1388-2863(+)
ATGGATCATACATCTGTTTTTTTCACCATCTTTTTCTCCTTGTGCTTTCTTATTAGCTCGGTTCAAGGGAGTAGGTTCATAACAACAATGTTTATGCATGGCATCCATGCAAATTTAAAGATCTCTGTGCCACCTTCTCCTGCCCCTATTGCTAATAATGGTCCTAGATATGATCATGATCATAATGTTGAATATTATTCTCCTCCTCCTAGCAATAATGATAGCTCTAATGTTGGACAAATGAACAATGTTTTTGATGTTCGATCCTATGGGGCCGTTGGGGATGGCTTAATAGATGATACAGCTGCATTCAAATCAGCTTGGGATGCTGCTTGTCAAGTAGATAGTGCAAAGGTTGTTGCACCTCAAGGATATTCCTTCTTGCTTCAATCTTCAATTTTCACTGGCCCTTGCAAGAGTGGAGTGGTGTTTCAGATTGAAGGAACAGTTGTACCACCAGATGGACCAGATTCATGGCCTAAGAGTAGCAGCAAAAGGCAATGGTTAATCTTTTATAGAACTCATGGCTTGACTTTCCAAGGTGGTGGCCTTATTGATGGCAGAGGAGAAAAGTGGTGGAATCTTACTTGTAAACCTCATAAAGGCATCAATGGTACCACATTGCCTGGTCCTTGTGACAGCCCAGTTGCTATAAGATTTTTCGGGTGTACAAACTTGACAATTCGAGGGCTAAATCTCATCAACAGCCCTCAGTTTCATATTCGGATTGATGCTTGTCAAAATGTGAATGTGGATTCTCTCTCCATTAAGTCTCCAGCTAATAGTCCCAATACTGATGGCATTCACGTTGAGAACACAAGTGATGTCACAATATACAACTCTCTCATCTCCAATGGTGATGATTGTATATCAATTGGAGCTGGTAGTCATAATTTGGACATAAGGAATGTTACCTGTGGTCCTAGTCATGGAATAAGCATTGGGAGCCTAGGAGTTCACAACAGCCGGGCCTGTGTATCAAACATAACAGTAACCGACTGCCTGATCAAGCACTCAGACAATGGGGTCCGGATCAAGACATGGCAAGGCGGGTCTGGATCTGTATCCGGTGTAACCTTTGACGGGATCCGGATGGATACTGTCCGAAACCCGATTATCGTAGACCAATACTATTGCCTATATAGCAACTGCTCCAATCAGACATCAGCTGTCTCCATTTCCACAATATCCTACTCCAATATCAAGGGGACATTTGATTCTAGGGCCCCACCTGTCCACCTGGCATGCAGCGATTCGGTCCCATGTACCAACATTACACTGTCGGGTCTGGAGCTCCTGCCCGCTGTGACAACTTATTCGGGTTTGGGTCGCAAGTATAGGGCCTTAACAGAGCCCTTTTGTTGGAATGCTTATGGGAGTACTTTGGATCAGGGGTTTTCAACCCCTCCTGTTTATTGTTTGTTGAAGGGCTTGCCATACTTGGATTTACCAGGAACTGATTTTGGACAGTGCTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_49267.p1 GENE.R_Transcript_49267~~R_Transcript_49267.p1 ORF type:complete len:492 (+),score=63.75,Glyco_hydro_28|PF00295.13|2.1e-88,Pectate_lyase_3|PF12708.3|6.7e-08,Beta_helix|PF13229.2|9.2e-09,Beta_helix|PF13229.2|11 R_Transcript_49267:1388-2863(+)
MDHTSVFFTIFFSLCFLISSVQGSRFITTMFMHGIHANLKISVPPSPAPIANNGPRYDHDHNVEYYSPPPSNNDSSNVGQMNNVFDVRSYGAVGDGLIDDTAAFKSAWDAACQVDSAKVVAPQGYSFLLQSSIFTGPCKSGVVFQIEGTVVPPDGPDSWPKSSSKRQWLIFYRTHGLTFQGGGLIDGRGEKWWNLTCKPHKGINGTTLPGPCDSPVAIRFFGCTNLTIRGLNLINSPQFHIRIDACQNVNVDSLSIKSPANSPNTDGIHVENTSDVTIYNSLISNGDDCISIGAGSHNLDIRNVTCGPSHGISIGSLGVHNSRACVSNITVTDCLIKHSDNGVRIKTWQGGSGSVSGVTFDGIRMDTVRNPIIVDQYYCLYSNCSNQTSAVSISTISYSNIKGTFDSRAPPVHLACSDSVPCTNITLSGLELLPAVTTYSGLGRKYRALTEPFCWNAYGSTLDQGFSTPPVYCLLKGLPYLDLPGTDFGQC*

Click here to download the sequence:
Link to NCBI Protein BLAST