Transcript Information: R_Transcript_49408.p1


Annotated TAIR IDAT4G12750.1
Annotated Gene NameHomeodomain-like transcriptional regulator
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr4:7498009-7503920 | Reverse length=1131
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.1476941063063
Replicate 22.1085646375516
Replicate 32.8852741823239
Condition 2: 8 Hour
Replicate 13.2925673716296
Replicate 23.7870770096987
Replicate 35.0824509737084
Condition 3: 24 Hour
Replicate 14.4743300894845
Replicate 24.3547404788204
Replicate 34.3030296022751


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_49408.p1 GENE.R_Transcript_49408~~R_Transcript_49408.p1 ORF type:complete len:1175 (+),score=262.67,DDT|PF02791.13|1.1e+03,DDT|PF02791.13|7.9e-08,Homeobox|PF00046.25|3.4e-07,Homeobox|PF00046.25|5.9e+03,WHIM3|PF15614.2|2.3e-06 R_Transcript_49408:197-3721(+)
ATGGCAACTCAGCAACTTCACCATGACAGCAATAATGGTGGAGCATCATCAGCTATCACCCTCAATGACTTCAACGACGCCGTTTTCACTTTACAGAGAAAGACCCCACTTCAGCTTCAAACCCTTGAGAATTTGTACTCAGATGATAAGAATCCACCACTGGGTAGGATGGAAGACTATGCCTCAGCTTTGGGGCTGACTTGTGAGCAGGTGAGAAGATGGTTTGTTGATCGACGTCGAAGAGATAACCGAGGTGCTACTACAACTCGGAGAAGGAATAAGTCGACAGGGAGCTCGGCAAAGAGCAAATGTAGAACCAAGAACACAAAGTGTGTCTCGAATTTGGCACTAGAAAATGTTGGTTGTAGTAGTAGTGAGCCGACACTTTTGCAACATATATTGTATCCTCCGGAGTATATATTACAGAGGGTGTTCAGGAAAGATGGGCCCCCCCTCGGTGTGGAGTTCGACCTTCTTCCATCTACAGCGTTTCAAGGTCACAGCGTTACTCCAGATAACAGATGTTCCCAGGCTACTTGTCAAGATGAGCAAGGGGGGAGAAAACGGAGGAAGGTGTTCGGGCATGCAAATGTAGACTCAGAGCAACAGTCTCCAAATGAGGCTCCCATGAAGAAGCATGGAATGGGGAAAGGTCTGATGTCAATTATGCAGCTGGCAAATTCTCAAGCTTCGCGCCAGAAGAATGTGAGAGCATCAAAAAGGACCAAGGTGCTTCCTTGTAGAACCACTTCAACGAAAAAATATGGCATGGGCAAAGGCTTAATGACGGTTTTGCAGCTTGCAAATCGGGACTGTGAGAGCAGCCAAAACAAGAGACCACAAAGACGGAAGCCTGTGACTCAGAGAAGGTTAGGGAAGAAGTTGCAGGAGAAGAGGAAGCCTTCTGTAAGACAGAGAAAGAAATCCATCCAGAATGAAAACCGGAAGACATGTAGAGAGAGTTGCAAACTTGCTCTGGATTTGGCGAGTTATGAAGATAATATGAGCTCATTGGCAGCACTGGCAGATGATGAGGAACTTGAAATGAAGGAGCTGCAAGCTGGACCAAACCCACTGACTTGCAGTGCACATTTCAGTACCGGTGGAACTCATGGTTGTTCCCTTTGCAAAGGTCTTTTACCAAAGTTTCCCCCTGTTTCTATTAGAATGAGAAAACCTCTCTGTATGAACCCTTGGAACTCTTCTTTGGATCTCGTGAAGAAACTTTTCAAGGTTTTCCATTTTCTATATACTTATGCTGTGATAATCGATATTTGTCCATTTACTTTCGATGAGTTCACACAAGCATTCCATGAAAAGGACTCCTCACTACTAGGAAAACTGCACATGTGCCTCCTCGGCTTTTTGCTGTCTGATATTGAGAAGGAACTGTCTAATGGGCTTTCAATTCATTCAAGCAAAAATTGCATGTTTCGAAACTTACTTCATTCGGCAGAAAAACAGAAGTCTGATGTCAGTTTTTGGAAGACATCCCTAAACCCGCTAACATGGACTGAAATATTGCGACAAGTCCTAGTTGCAGCTGGCTTTGGATCAAAAGATGGTATCTTGAGAAAAGGATGTCATAACATGGAAGCAGAACATATCGTCAAGTATGGATTGAGCCCTGGTACACTGAAGGGTGAACTGTTTAGTATTTTGCTAGAGCAAGGAAATAAAGGGATGAGAGTTAATGAGCTGGCAAATTCTTCGCGTATTGTGGACTTCAATCTGGCAAAAACAAATGGTGAACTGGAAGATATTATCTGCTCAACTTTGGCTGGCGATATTACTTTATTTGAGAAGATCTCGTCTTCTGCATATCGTTTACGTTTAACGTCTATCATGAAGAAAGATGTAGATACTCAGTCAGATAATGAGGACTGTGGCAGCATTGATGATGAAGCCAGGGGCTGCAGTATTAATGATTCGGAGTGTGATTCTGGAAATCCTACACCAAGAAATGATTTCAGGCATCGTTCTGGTGAAAGTAACACATTGAGTCTTTGCACTGAAATTGATGAGAGTCATCCAGGGGAGTCATGGCTCCTAGGTCTCATGGAGGGAGAATATTCTGACCTAAGCATTGAGGAGAAGCTGAATGCTTTGTTGGCTTTAATTGATCTTTTAAGTGCAGGATCCAGCATTAGACTTGAGGATCCACCAGCAATGCTTGCTGAATGCGTTCCAAGTATTTATCAGCATGGATCTGGAGGGAAGATCAAGAGAGCATCATTAAGGCAACCTAGCTTGGCGACCTCATCATGGTTTGATGTTAGAGAAACATGCAGTGTGGAACAAATACACCCATCATCTGAATTTCGTCCTGTTGATTCCTCACTTTCATTTTCAATGTCATGTAGAAAAGATAAATCTTCTTTCATGATGAAAGATCTGAATGGAACTGGAACTGATGGCAGTCTGCATCCAATGCAATCTATATTCCTGGGTTCTGATCGTAGGTATAATAGATACTGGCTCTTCTTGGGGCCTTGTGATACTGATGATCCTGGACATACAAGAGTCTATTTTGAATCTTCAGAAGATGGTCACTGGGCAGTGATTGAAAGCGAAGAGGCTCTATGTGGCTTGTTGGCTTCTTTGAATAGCCGGGGTAGAAGGGAAGCTTACCTTCTGGCATCCCTGGAGAGGTGTTCGTCAGTTCTCATTGATGAAATGTCAAGTAGGGTTGTAGTTGAGGCTGGTTTTAGTCAGCCGACACATTCTGATATATCAGAGATAGATAGGGTCAATGAATGCAGCCCATCACCCATATCAGATATAGATAACAACCTGTCTTTGGCTGAGATTTCACATAATTCTGTAACATCAGCTGGTACTGCAGTTCTTAAAGTTGATAAGGTAGAAGAGCAGAAACAAAAGTATGCTCGCCGGCAAGCATATGACTTGTGGATATGGAATTCTTTCTATTCTGGTCTTAATGCTGCTAAAAATGGAAAGCAGTCATATTTTGATTCATTGACAAGATGTGGAAGTTGTAATGATCTTTATTGGCGTGATGAGAGGCATTGTAAGACTTGCCATGCGACATTCGAGCTTGACTTTGATCTTGAAGAAAAGTATGCCATCCATATGGCTACATGTCAGGGAAGAGAAGATGCCGATATGTATCCGACGCATAAAATTTTACCATCTCAAATTCAGGCACTGAAAGCTGCAATCCATGCAATTGAGTTGGCTTTGCCTGAGGATGCACTGGTTGGGTCATGGAAAAAATCTGCTCATAGGCTTTGGGTGAGGAGGCTCAGACGCACCTCTTCTTTACATGAGCTTTCACAGGTGCTAGCTGATTTTGTTGGTGCCATTAATGCGGAATGGTTGTCACAATGCTATATGGAACTTGATTGTGATTCTGCGCTTGAAGATATTGTTGCGTGCTTTCAAAATATGCCCCAGACATCATCTGCTGTTGCTCTCTGGGTAGTTAAATTGGATAGACTGGTTGCTCCACACTTGAATATGGGGCTGGAAGTTGGCTTGACTAAAGGCAAGAGAAACCGATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_49408.p1 GENE.R_Transcript_49408~~R_Transcript_49408.p1 ORF type:complete len:1175 (+),score=262.67,DDT|PF02791.13|1.1e+03,DDT|PF02791.13|7.9e-08,Homeobox|PF00046.25|3.4e-07,Homeobox|PF00046.25|5.9e+03,WHIM3|PF15614.2|2.3e-06 R_Transcript_49408:197-3721(+)
MATQQLHHDSNNGGASSAITLNDFNDAVFTLQRKTPLQLQTLENLYSDDKNPPLGRMEDYASALGLTCEQVRRWFVDRRRRDNRGATTTRRRNKSTGSSAKSKCRTKNTKCVSNLALENVGCSSSEPTLLQHILYPPEYILQRVFRKDGPPLGVEFDLLPSTAFQGHSVTPDNRCSQATCQDEQGGRKRRKVFGHANVDSEQQSPNEAPMKKHGMGKGLMSIMQLANSQASRQKNVRASKRTKVLPCRTTSTKKYGMGKGLMTVLQLANRDCESSQNKRPQRRKPVTQRRLGKKLQEKRKPSVRQRKKSIQNENRKTCRESCKLALDLASYEDNMSSLAALADDEELEMKELQAGPNPLTCSAHFSTGGTHGCSLCKGLLPKFPPVSIRMRKPLCMNPWNSSLDLVKKLFKVFHFLYTYAVIIDICPFTFDEFTQAFHEKDSSLLGKLHMCLLGFLLSDIEKELSNGLSIHSSKNCMFRNLLHSAEKQKSDVSFWKTSLNPLTWTEILRQVLVAAGFGSKDGILRKGCHNMEAEHIVKYGLSPGTLKGELFSILLEQGNKGMRVNELANSSRIVDFNLAKTNGELEDIICSTLAGDITLFEKISSSAYRLRLTSIMKKDVDTQSDNEDCGSIDDEARGCSINDSECDSGNPTPRNDFRHRSGESNTLSLCTEIDESHPGESWLLGLMEGEYSDLSIEEKLNALLALIDLLSAGSSIRLEDPPAMLAECVPSIYQHGSGGKIKRASLRQPSLATSSWFDVRETCSVEQIHPSSEFRPVDSSLSFSMSCRKDKSSFMMKDLNGTGTDGSLHPMQSIFLGSDRRYNRYWLFLGPCDTDDPGHTRVYFESSEDGHWAVIESEEALCGLLASLNSRGRREAYLLASLERCSSVLIDEMSSRVVVEAGFSQPTHSDISEIDRVNECSPSPISDIDNNLSLAEISHNSVTSAGTAVLKVDKVEEQKQKYARRQAYDLWIWNSFYSGLNAAKNGKQSYFDSLTRCGSCNDLYWRDERHCKTCHATFELDFDLEEKYAIHMATCQGREDADMYPTHKILPSQIQALKAAIHAIELALPEDALVGSWKKSAHRLWVRRLRRTSSLHELSQVLADFVGAINAEWLSQCYMELDCDSALEDIVACFQNMPQTSSAVALWVVKLDRLVAPHLNMGLEVGLTKGKRNR*

Click here to download the sequence:
Link to NCBI Protein BLAST