Transcript Information: R_Transcript_49808.p1


Annotated TAIR IDAT1G42440.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: ribosome biogenesis; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AARP2CN (InterPro:IPR012948), Protein of unknown function DUF663 (InterPro:IPR007034); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G06720.1); Has 2741 Blast hits to 2088 proteins in 291 species: Archae - 2; Bacteria - 131; Metazoa - 833; Fungi - 650; Plants - 171; Viruses - 49; Other Eukaryotes - 905 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:15895528-15899939 | Reverse length=793
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 127.714040589908
Replicate 218.607340824052
Replicate 323.572799498443
Condition 2: 8 Hour
Replicate 121.730818195912
Replicate 221.852037500931
Replicate 328.432168847863
Condition 3: 24 Hour
Replicate 134.596341612419
Replicate 227.910637357102
Replicate 333.149772711635


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_49808.p1 GENE.R_Transcript_49808~~R_Transcript_49808.p1 ORF type:complete len:791 (+),score=187.81,RIBIOP_C|PF04950.8|5.4e-114,AARP2CN|PF08142.8|4.4e-20 R_Transcript_49808:167-2539(+)
ATGGGTGGTCGAGCTCAAGTCAATAAGCCTCACAAAACTCGTTTCTCTTCTAAATCCTCTCGCAATCTTCACAAAACCCTCAAAGAAAAGCATCAAGCTGGAAAAGTAGACCGGAATGTTGGCAAAGGAGCTCGTGCCGCTCGTATCCAGCGAAATAAGATGATGCGTGAACAAAAGCGAGCTGCTGTATTGAATGAAAAAAGAGCGTTAAGTGCATCCAGAAGTCCACCCCGTGTAATTGTCCTATTTGGTTTGTCTGCTCAAGTCGATCTTAATTCTCTTGAAAGAGACTTATTGGCATTGCTGTCATCGGAAAGCAACAATGGTGTGTTTCCTACTGTTGCTTCCTCCGAGTACAAGATGAGAGCTACGGTGCTGAAAGCTCCTCATGGGGATCTATCCTCGTGCATGGAAATGGCCAAGGTTGCAGATTTGATTGCATTCGTAGCATCAGCAAATTCTGCATGTGAAGATGGTTCATCTGATTACATTGACTCGTTTGGAGCACAATGCCTTTCTGTATTCAGAGCCATTGGCTTGCCAAGCACAGTCGTCTTTATCCGTGACTTACCTAGTGATCTGAAACGAAGACATGAATCTAAGAAATTCTGCACTTCCAGTCTTGCATCTGAGTTCCCTGAAGATTGCAAATTTTATCCAGCAGACACAAAGGATGAGCTGCACAAGTTCCTATGGCTTTTGAAAGAGCAAAGGCTGACTTCTCCTCACTGGAGGAACCAACGAGCGTATGTTGCTGCTCAAAAGGCTGAGATGCTTGATCACGATTCTGTTATAGGAAAATGTACGCTCGTTCTCACTGGTTTTCTTCGTGCTCGTAATCTCTCTGTGAACCAGCTGGTTCATGTCTCTGGAGCAGGGGATTATCAATTGTCAAAAATTGAAATTCTGCAGGATCCATATCCTCTGAATCCAAGAAACAGACGGGACATTATGGATGCTGATGATGTACATGATGTGCAGGTGATCCGCTCTTTAGATCCCGACAATTCAAAGCAAGAGCCTTTACTTGTTGAAAACATTCCAGATCCTCTTGCCGGAGAACAGACATGGCCAACCGAGGCAGAAATGGCTGAGGCAGAGGAAGACCGAAAGCAGAAGAAACTTAAAAAGCGGAGGCTTCCACCTGGTACTTCAGAATATCAGGCTGCTTGGATTGTGGATGACAATGATGAAGGTGATTTTGAAAGTAGTGATGAAGGAAACGATGGTATGGTGTTGGATGAGGGAGAAGACGGTGATTCTTCTAACAAGGCTGTCAACAATTTTGACTTTGAAGATCAAGGCTCTCTTGACTTAGGAAATTCTGATGCAGAAACCGAGACAGATTCAGTAATGGTGGATGGAGAGAACATGACTAGGGAGCAGATAGAGGATGACATAAAGCGGCTGAAAGATGCTCATGCAGAAGATGAGGAATTCCCAGACGAAGTTGATACTCCTTTAGATTTGCCTGCAAGAAAGCGTTTTGCAAAGTATCGAGGCCTCAAGTCTTTCAGAACATCTGCATGGGATCCTAAGGAATCACTACCGCCAGAATATGCTAGAATATTTGCTTTCGATAATTTTGCCAGAACTCAAAAACATGTGCGTGCTAAAGCTTCAGAATTGGACAAAGAGAGCAAGGATGACATTGTTTCCCCTGGCACATATACAAGGCTGTATATTAAAGATGTACCAATTACTGCTGCTTCAAAAACATGTATGCATGCAAAAATAATGCCCATTATAGCAAGCAGCCTATTGCAACATGAGTCCAAGATATCTGTCCTCCATTTCAGCATTAAAAAGCATGATAGTTACACTGAACCAATCAAAGCAAAAGAGGAGCTAATTTTTCATGTTGGTTTCCGGCAGTTTGTTGCTAGACCAGTATTTTCTACGGACAGCCTGAATTCTGACAAGCACAAGATGGAGAGGTTTCTTCATGCTGGGCGCTTTTCTATGGCTTCAATATATGCTCCAATTTCCTTTCCACCTCTTCCTTTGGTTGCGATGAAGAATGTAGGAGAGGCGAACTCACCTGTTGTGGCTGCTGTTGGTTCTCTGAAAAGTGTTGACCCAGACAGGATCATTCTGAAGAAGATCATTCTAACTGGTTACCCACAGCGAGTTTCTAAAGTCAAAGCCACAGTGAGATATATGTTCCACCACCCTGAAGACGTAAAATGGTTCAAGCCTGTTGAAGTATGGACTAAATGCGGACGTCGTGGGCGTGTCAAGGAGCCTGTTGGTACTCATGGGGCAATGAAGTGCGTCTTCAATGGGGTTCTCCAACAGCATGACACTGTTTGCATGAGCCTGTACAAGCGTGCATACCCCAAGTGGCCAGAACATCAGTTTCCGGTTGTTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_49808.p1 GENE.R_Transcript_49808~~R_Transcript_49808.p1 ORF type:complete len:791 (+),score=187.81,RIBIOP_C|PF04950.8|5.4e-114,AARP2CN|PF08142.8|4.4e-20 R_Transcript_49808:167-2539(+)
MGGRAQVNKPHKTRFSSKSSRNLHKTLKEKHQAGKVDRNVGKGARAARIQRNKMMREQKRAAVLNEKRALSASRSPPRVIVLFGLSAQVDLNSLERDLLALLSSESNNGVFPTVASSEYKMRATVLKAPHGDLSSCMEMAKVADLIAFVASANSACEDGSSDYIDSFGAQCLSVFRAIGLPSTVVFIRDLPSDLKRRHESKKFCTSSLASEFPEDCKFYPADTKDELHKFLWLLKEQRLTSPHWRNQRAYVAAQKAEMLDHDSVIGKCTLVLTGFLRARNLSVNQLVHVSGAGDYQLSKIEILQDPYPLNPRNRRDIMDADDVHDVQVIRSLDPDNSKQEPLLVENIPDPLAGEQTWPTEAEMAEAEEDRKQKKLKKRRLPPGTSEYQAAWIVDDNDEGDFESSDEGNDGMVLDEGEDGDSSNKAVNNFDFEDQGSLDLGNSDAETETDSVMVDGENMTREQIEDDIKRLKDAHAEDEEFPDEVDTPLDLPARKRFAKYRGLKSFRTSAWDPKESLPPEYARIFAFDNFARTQKHVRAKASELDKESKDDIVSPGTYTRLYIKDVPITAASKTCMHAKIMPIIASSLLQHESKISVLHFSIKKHDSYTEPIKAKEELIFHVGFRQFVARPVFSTDSLNSDKHKMERFLHAGRFSMASIYAPISFPPLPLVAMKNVGEANSPVVAAVGSLKSVDPDRIILKKIILTGYPQRVSKVKATVRYMFHHPEDVKWFKPVEVWTKCGRRGRVKEPVGTHGAMKCVFNGVLQQHDTVCMSLYKRAYPKWPEHQFPVV*

Click here to download the sequence:
Link to NCBI Protein BLAST