Transcript Information: R_Transcript_49907.p1


Annotated TAIR IDAT1G76980.1
Annotated Gene NameBEST Arabidopsis thaliana protein match is: embryo defective 2170 (TAIR:AT1G21390.1); Has 65 Blast hits to 65 proteins in 23 species: Archae - 0; Bacteria - 8; Metazoa - 1; Fungi - 8; Plants - 40; Viruses - 3; Other Eukaryotes - 5 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:28926466-28927242 | Reverse length=258
E-Value3.4E-25
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 127.923681093572
Replicate 221.381553634946
Replicate 324.850657988486
Condition 2: 8 Hour
Replicate 139.424488974693
Replicate 260.6718422434
Replicate 360.491491356473
Condition 3: 24 Hour
Replicate 135.595132307174
Replicate 225.495069910209
Replicate 334.739201016819


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_49907.p1 GENE.R_Transcript_49907~~R_Transcript_49907.p1 ORF type:complete len:436 (+),score=86.02 R_Transcript_49907:58-1365(+)
ATGATCTTGCCATTCCAATCTTCCCTTCTTTTTTGTTCTTTTCTCTTCGTTCACACTTACAACCAAACCAACCACAAACCTTTAAGCATATCTCTCCCCTTTTATCCTGTTTCATCCCCCCTTACGAAAAAAAAAATGCATGATTCTGGAACTAAACCTCCTGAAAGTCGTATCCATTTATTTGATCCTGTTGGTCTTTTAAATGATGGTTATGGATACAGAGCTTCGAATTACACCGTTCGCCCTCGAAGGCCAACAAAATCCTATGATAACTTCATAGATGCTAACACCACCACAGGGGGGGTTAGATCTTATGATAGCTTCAGTGATGCTTATAGTGTAGTGGGAGGTTTAAAGTCTTATGATAGCTTTAGTTCGGATACAAATGGTGTTGGGGGTCTTAACTCTTATGATCATACCAATAGTGATAATAAGGATATAAATGATGGTGGAGGGGGATTAAGGTTTGGAGTTGATGCAACAGTGGAAGATGATTCTGATGTTTCCACACCGCGGTTGTGGAAACCCAGTTCTCCTACAAGTCCTAAAAGTCTGTCTGTTAATTCTTCTCCTTTACATCCTGCTGCAAGTCCTAAGTCTGTCAAGTTTACTCCTCCTATGTCTCTTAATTCTTCTCCTGTGCATCCCAGCCACAATCACTATCATACCATTTCCCCGAATTCTAGGACTCAGGCGATTGCCAAAGGCCGGAGAGAGCTGATGGAGATGGTCCGAGACTTGCCTGAGTCCTTCTACGAGCTCTCGTTGAAGGATTTAGTGGAGCAGAAACCTGATATGGAGGTTCAGAAGGAGGCTAACCTTCCTGAAGAAAAGAGGCCTGCTGTTGTTAAGGAAGCAACAAAGACCAAGGAGACTAAGAAGCAGCAGAAGAAGAGTAGCAAGAAGGTTAAGAAGAGTGAGAGCAAGAAGAAGATGATGAGGAGCAGAAGTGTTGATAATGGGAAATTTCTCCTAAGGACATCAGTTTTCCCAATTTTTATGGGATCAAAGAAGAATAAGAAGAATTTGGGTGGTAGTAGTAGCAGCTTTAAAGTAGCCCCGGTACCAAAACCACCACTGACAGCAGGTGGATCAATCAAGGGTGTTGAGAAAGACTGGTGGAGGAGAAAATCGTGCATCTCAAGCGAGAGCGAAGAGAGCAACGGACTGAGTAGCAATAGTGCCAGCAGCAGTAGCAGCACCAGCACCAACACCAGTCGCAGTAACAGCGGCAATGGAAGGCGAAGAAATCGATTTATACCCAGCTGTTGCTTCTTCAATGGGAGGAGAATCAGAGGCAGGAAATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_49907.p1 GENE.R_Transcript_49907~~R_Transcript_49907.p1 ORF type:complete len:436 (+),score=86.02 R_Transcript_49907:58-1365(+)
MILPFQSSLLFCSFLFVHTYNQTNHKPLSISLPFYPVSSPLTKKKMHDSGTKPPESRIHLFDPVGLLNDGYGYRASNYTVRPRRPTKSYDNFIDANTTTGGVRSYDSFSDAYSVVGGLKSYDSFSSDTNGVGGLNSYDHTNSDNKDINDGGGGLRFGVDATVEDDSDVSTPRLWKPSSPTSPKSLSVNSSPLHPAASPKSVKFTPPMSLNSSPVHPSHNHYHTISPNSRTQAIAKGRRELMEMVRDLPESFYELSLKDLVEQKPDMEVQKEANLPEEKRPAVVKEATKTKETKKQQKKSSKKVKKSESKKKMMRSRSVDNGKFLLRTSVFPIFMGSKKNKKNLGGSSSSFKVAPVPKPPLTAGGSIKGVEKDWWRRKSCISSESEESNGLSSNSASSSSSTSTNTSRSNSGNGRRRNRFIPSCCFFNGRRIRGRK*

Click here to download the sequence:
Link to NCBI Protein BLAST