Transcript Information: R_Transcript_49910.p1


Annotated TAIR IDAT1G76980.1
Annotated Gene NameBEST Arabidopsis thaliana protein match is: embryo defective 2170 (TAIR:AT1G21390.1); Has 65 Blast hits to 65 proteins in 23 species: Archae - 0; Bacteria - 8; Metazoa - 1; Fungi - 8; Plants - 40; Viruses - 3; Other Eukaryotes - 5 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:28926466-28927242 | Reverse length=258
E-Value4E-11
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 118.814590522556
Replicate 213.751423129795
Replicate 314.046109427091
Condition 2: 8 Hour
Replicate 122.709967049973
Replicate 228.356546862339
Replicate 333.390984811569
Condition 3: 24 Hour
Replicate 117.155284521801
Replicate 214.687348228231
Replicate 318.616575195229


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_49910.p1 GENE.R_Transcript_49910~~R_Transcript_49910.p1 ORF type:complete len:455 (+),score=92.46 R_Transcript_49910:58-1422(+)
ATGATCTTGCCATTCCAATCTTCCCTTCTTTTTTGTTCTTTTCTCTTCGTTCACACTTACAACCAAACCAACCACAAACCTTTAAGCATATCTCTCCCCTTTTATCCTGTTTCATCCCCCCTTACGAAAAAAAAAATGCATGATTCTGGAACTAAACCTCCTGAAAGTCGTATCCATTTATTTGATCCTGTTGGTCTTTTAAATGATGGTTATGGATACAGAGCTTCGAATTACACCGTTCGCCCTCGAAGGCCAACAAAATCCTATGATAACTTCATAGATGCTAACACCACCACAGGGGGGATTAGATCTTATGATAGCTACAGTGATGCTAATAGTGTTGTGGGAGGTTTGAAGTCTTATGATAGCTTTAGTTCGGATACAAATGTTGGTGGGGGTTTCAACTCTTATGATCATACCAGTAGTAGTAATAATAAGGATATAAATTTTGGAGGGGGTCCAAAATCTTATGATCATACCAGTAATAATAAGGATATAAATGGTGGTGGTGGGGGGTTAAGGTTTGGAGTTGATGCAACAGTGGAAGATGATTCTGATGTTTCCACACCGCGGTTGTGGAAACCCAGTTCTCCTACAAGTCCTAAAAGTCTGTCTGTTAATTCTTCTCCTTTACATCCTGCTGCAAGTCCTAAGTCTGTCAAGTTTACTCCTCCTATGTCTCTTAATTCTTCTCCTGTGCATCCCAGCCACAATCACTATCATACCATTTCCCCGAATTCTAGGACTCAGGCGATTGCCAAAGGCCGGAGAGAGCTGATGGAGATGGTCCGAGACTTGCCTGAGTCCTTCTACGAGCTCTCGTTGAAGGATTTAGTGGACCAGAAACCTGATATGGTGGTTCAGAAGGAGGCTGAAGAAAAGAAGCCTGCTGTTGTTAAGGAAACAACAAAGACCAAGGAGAGTAAGAAGAAGCAGCAGCAGCAGAAGAAGGGTAGCAACAAGGTTAAGAAGAGTGAGAGCAAGAAGAAGATGATGAGGAGCAGAAGTGTTGATAATGGGAAATTTCTCCTAAGGACATCAGTTTTCCCAATTTTTATGGGATCAAAGAAGAATAAGAAGAATTTGGGTGGTAGTAGTAGCAGCTTTAAAGTAGCCCCGGTACCAAAACCACCACTGACAGCAGGTGGATCAATCAAGGGTGTTGAGAAAGACTGGTGGAAGAGAAAATCGTGCACATCAAGCGAGAGCGATGAGAGCAACGGACTGAGTAGCAATAGCGCCAGCAGCAATAGCAGCACCAGCACCAGCACCAGTCGCAGTAACAGCGGCAATGGAAGGCGAAGAAATCGATTTATACCCAGCTGTTGCTTCTTCAATGGGAGGAGAATCAGAGGCAGGAAATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_49910.p1 GENE.R_Transcript_49910~~R_Transcript_49910.p1 ORF type:complete len:455 (+),score=92.46 R_Transcript_49910:58-1422(+)
MILPFQSSLLFCSFLFVHTYNQTNHKPLSISLPFYPVSSPLTKKKMHDSGTKPPESRIHLFDPVGLLNDGYGYRASNYTVRPRRPTKSYDNFIDANTTTGGIRSYDSYSDANSVVGGLKSYDSFSSDTNVGGGFNSYDHTSSSNNKDINFGGGPKSYDHTSNNKDINGGGGGLRFGVDATVEDDSDVSTPRLWKPSSPTSPKSLSVNSSPLHPAASPKSVKFTPPMSLNSSPVHPSHNHYHTISPNSRTQAIAKGRRELMEMVRDLPESFYELSLKDLVDQKPDMVVQKEAEEKKPAVVKETTKTKESKKKQQQQKKGSNKVKKSESKKKMMRSRSVDNGKFLLRTSVFPIFMGSKKNKKNLGGSSSSFKVAPVPKPPLTAGGSIKGVEKDWWKRKSCTSSESDESNGLSSNSASSNSSTSTSTSRSNSGNGRRRNRFIPSCCFFNGRRIRGRK*

Click here to download the sequence:
Link to NCBI Protein BLAST