Transcript Information: R_Transcript_50020.p1


Annotated TAIR IDAT5G51170.1
Annotated Gene Nameunknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0406 (InterPro:IPR019146); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:20793906-20795330 | Reverse length=285
E-Value2E-06
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 21.944101890398
Replicate 31.2725965331196
Condition 2: 8 Hour
Replicate 11.81376777387
Replicate 20
Replicate 34.3698321863895
Condition 3: 24 Hour
Replicate 14.0388734937628
Replicate 22.4505843211753
Replicate 31.2159835937165


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_50020.p1 GENE.R_Transcript_50020~~R_Transcript_50020.p1 ORF type:complete len:108 (+),score=27.54,HVSL|PF09749.5|3.9e-07 R_Transcript_50020:135-458(+)
ATGGATGCTTTGATTGCATCGTATGGAGATTCATCATCATCAGATTCTGACTCAGAACAACCTTCCTGCTGTTCTTCATCAACAATATCTTCCTTATCTCAGAACACAAACCCTTCTCCTCTCCCTCCACCTCCACTTTCTCTTCTAACCCCACCTAATTCCCTCACTGGTGCTCTTGATTTGTCACAAACGGGTCAGCCTAGTCGGGTTCGGAGCTTCCCCCATGTTGAAGGCAATTATGCTTTACATGTTTTTATCCCAGTTACTTTTTGCTTGCAGTTCGTGTACCACAAGCTGCAAGGAAGGAAGCAGCTCAGTTCTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_50020.p1 GENE.R_Transcript_50020~~R_Transcript_50020.p1 ORF type:complete len:108 (+),score=27.54,HVSL|PF09749.5|3.9e-07 R_Transcript_50020:135-458(+)
MDALIASYGDSSSSDSDSEQPSCCSSSTISSLSQNTNPSPLPPPPLSLLTPPNSLTGALDLSQTGQPSRVRSFPHVEGNYALHVFIPVTFCLQFVYHKLQGRKQLSS*

Click here to download the sequence:
Link to NCBI Protein BLAST