Transcript Information: R_Transcript_50021.p1


Annotated TAIR IDAT5G51170.1
Annotated Gene Nameunknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0406 (InterPro:IPR019146); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:20793906-20795330 | Reverse length=285
E-Value2E-90
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 15.7723038916632
Replicate 25.3836667734098
Replicate 36.4608747066071
Condition 2: 8 Hour
Replicate 14.813460630655
Replicate 25.1602035018121
Replicate 37.2141016568205
Condition 3: 24 Hour
Replicate 14.4149629284046
Replicate 24.3356491836178
Replicate 34.3027111777661


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_50021.p1 GENE.R_Transcript_50021~~R_Transcript_50021.p1 ORF type:3prime_partial len:234 (+),score=53.78,HVSL|PF09749.5|2e-40 R_Transcript_50021:135-833(+)
ATGGATGCTTTGATTGCATCGTATGGAGATTCATCATCATCAGATTCTGACTCAGAACAACCTTCCTGCTGTTCTTCATCAACAATATCTTCCTTATCTCAGAACACAAACCCTTCTCCTCTCCCTCCACCTCCACTTTCTCTTCTAACCCCACCTAATTCCCTCACTGGTGCTCTTGATTTGTCACAAACGGGTCAGCCTAGTCGGGTTCGGAGCTTCCCCCATGTTGAAGGCAATTATGCTTTACATGTTTTTATCCCAGTTCGTGTACCACAAGCTGCAAGGAAGGAAGCAGCTCAGTTCTTGAAGAGAGTCTCATTTAATGTTCCTGGTCTTCATGTTGTTGATGTTGATGTACCATTTGACAATCTCAGAAATGATGACCAGAAACTTGAACAGATTGCCTTGGGGAGGGAATTCCATATAAGTTTGGGAAGGACTGTTCCCATTAGGGTGCATCAAATTGATTCAATGGTCACTATGCTTCGCCAGAAGCTACAATGTCAGAAGCGGTTAGCTTGGTATTGGATAAATTTCAGCAAGTGGGAGGTTTTTTTAAATGATGATTGCACACGCACCTTTCTTTCAGCAGAAGTCATTACAGGAGGCTTGTCTGAGATAACGAAGCAGATTCAAGCTGTCAATGAAGTGTATAGGCTTCACAATCTTCCCGAGTTTTACAAGGATCCGCGTCCTCAT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_50021.p1 GENE.R_Transcript_50021~~R_Transcript_50021.p1 ORF type:3prime_partial len:234 (+),score=53.78,HVSL|PF09749.5|2e-40 R_Transcript_50021:135-833(+)
MDALIASYGDSSSSDSDSEQPSCCSSSTISSLSQNTNPSPLPPPPLSLLTPPNSLTGALDLSQTGQPSRVRSFPHVEGNYALHVFIPVRVPQAARKEAAQFLKRVSFNVPGLHVVDVDVPFDNLRNDDQKLEQIALGREFHISLGRTVPIRVHQIDSMVTMLRQKLQCQKRLAWYWINFSKWEVFLNDDCTRTFLSAEVITGGLSEITKQIQAVNEVYRLHNLPEFYKDPRPH

Click here to download the sequence:
Link to NCBI Protein BLAST