Transcript Information: R_Transcript_50023.p2


Annotated TAIR IDAT5G51170.1
Annotated Gene Nameunknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0406 (InterPro:IPR019146); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:20793906-20795330 | Reverse length=285
E-Value4.8E-38
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 18.5611232796468
Replicate 211.520094033721
Replicate 39.3248666320621
Condition 2: 8 Hour
Replicate 18.6675628131841
Replicate 210.883615055444
Replicate 312.208162895128
Condition 3: 24 Hour
Replicate 18.126657425736
Replicate 211.320398368615
Replicate 38.9100390760821


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_50023.p2 GENE.R_Transcript_50023~~R_Transcript_50023.p2 ORF type:complete len:113 (+),score=8.80,HVSL|PF09749.5|1.2e-18 R_Transcript_50023:987-1325(+)
ATGAGCATACAATCGAGTATTTGCATTCACAGGGTAGTAGATAATGAACTTGGGAAGGACTTATCTACCCAGATAACGAAGCAGATTCAAGCTGTCAATGAAGTGTATAGGCTTCACAATCTTCCCGAGTTTTACAAGGATCCGCGTCCTCATATATCATTGGCATGGGCATTGGGCAATGTTAGTGCTTTGCTTCAAAGAGTGGTTGGAGAAGAGACGAAGAAACATCCGAATGTTGTGGGATCATTACAACAACGGGTTTTTACTGTTAAATTCAGCGGTATAGAGTGCAAAATAGGTAATAAGACTTACAAAATTTGTAAAGTACCAGATGACTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_50023.p2 GENE.R_Transcript_50023~~R_Transcript_50023.p2 ORF type:complete len:113 (+),score=8.80,HVSL|PF09749.5|1.2e-18 R_Transcript_50023:987-1325(+)
MSIQSSICIHRVVDNELGKDLSTQITKQIQAVNEVYRLHNLPEFYKDPRPHISLAWALGNVSALLQRVVGEETKKHPNVVGSLQQRVFTVKFSGIECKIGNKTYKICKVPDD*

Click here to download the sequence:
Link to NCBI Protein BLAST