Transcript Information: R_Transcript_50076.p3


Annotated TAIR IDAT5G28780.1
Annotated Gene NamePIF1 helicase
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:10812907-10814173 | Reverse length=337
E-Value5E-22
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.6394875109029
Replicate 20.88008444858734
Replicate 31.6459931206816
Condition 2: 8 Hour
Replicate 11.7594633495026
Replicate 22.9457449132101
Replicate 33.1520760957558
Condition 3: 24 Hour
Replicate 13.4367974891773
Replicate 21.5848090220774
Replicate 32.3591537985877


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_50076.p3 GENE.R_Transcript_50076~~R_Transcript_50076.p3 ORF type:complete len:167 (+),score=1.03,PIF1|PF05970.10|2.4e-07,Herpes_Helicase|PF02689.10|6e-07 R_Transcript_50076:1971-2471(+)
ATGAGCCCACATAATTTAATATTGAAGCTCAATTGCCCAGTCATATTGCTAAGGAATCTAAATCCATCAGTTGGATTATACAATGGAACAAGGCTCATTTGTAGAGGGTTCAAACATAACCTCATTATCTGTGAAATTTCAACGGGATATCGAGCAGGTGATTTTGTGTTCATACATCGAATAAGTTTGAGGCCATCAAACTCCATTGCATACCCGTACAAATTTGAGTGCAAGCAGTTTCCAATAAAATTGTGTTTTGCAATGACAATTAATAAATCTCAAGGTCAAACACTCACACAAGTTGGAGTGTACCTTCAGAAGCAGTGTTTCTCACATGGACAGTTGTATGTCGCACTCTCGAGAGCCAAAAAATCAAGTACTGTCAAAGTTTTTGTTGATGCCGACAAGAGCTCACATGAACGTCGACCCACTGTCACGAACGTCATCTTATTTGACCTACTCAGAAAAGCTGGCATACTTGTAGGCTCTTGCACGCACTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_50076.p3 GENE.R_Transcript_50076~~R_Transcript_50076.p3 ORF type:complete len:167 (+),score=1.03,PIF1|PF05970.10|2.4e-07,Herpes_Helicase|PF02689.10|6e-07 R_Transcript_50076:1971-2471(+)
MSPHNLILKLNCPVILLRNLNPSVGLYNGTRLICRGFKHNLIICEISTGYRAGDFVFIHRISLRPSNSIAYPYKFECKQFPIKLCFAMTINKSQGQTLTQVGVYLQKQCFSHGQLYVALSRAKKSSTVKVFVDADKSSHERRPTVTNVILFDLLRKAGILVGSCTH*

Click here to download the sequence:
Link to NCBI Protein BLAST