Transcript Information: R_Transcript_5015.p1


Annotated TAIR IDAT1G52220.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: photosystem I P subunit (TAIR:AT2G46820.2); Has 291 Blast hits to 291 proteins in 50 species: Archae - 0; Bacteria - 90; Metazoa - 0; Fungi - 0; Plants - 200; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:19453770-19454605 | Reverse length=156
E-Value5.8E-44
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.1423663092393
Replicate 22.5629286893134
Replicate 33.2263010698806
Condition 2: 8 Hour
Replicate 11.8393137988541
Replicate 23.3593813094739
Replicate 30
Condition 3: 24 Hour
Replicate 14.9580240961239
Replicate 23.624103573569
Replicate 33.2882936618813


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_5015.p1 GENE.R_Transcript_5015~~R_Transcript_5015.p1 ORF type:complete len:213 (+),score=22.38,CAAD|PF14159.2|1.2e-29 R_Transcript_5015:96-641(+)
ATGGAAGTAGTGGTCTCCACTCTCCAGTGTCAAGGTCACCGGTCATTCGCGCCTCCCAACAGTATCTTCCTTCCCTTTCCATCCACAATCTATCCAAAGGTTCCTGACATGGCTTCAATTATTTCCACTTTGCCTTTATCCCTTTACATTAATGGGGAAAATCCCTCTTTAAAACCCACTTCTATATTCCCTGTTTGTGCTCTCCCAGAAAGGCAAAGACGGGTGGGAGTTGTAGTGAAAGCAACAGGGGACAGATCTGAATCTTCAACATCTCTGAGTATTGTCAAGTCCATGCAGAATGTTTGGGATAAACCTGAGGATCGAGTTGGTGTTATTGGTGTGGGGTTGACCGCTGTTATAGCACTCTGGGCATCATTAAATTTGGTTTCAGCAATTGACAAGCTTCCCTTGGTACCAAGTTTCCTGGAATTCGTTGGCATATTGTTTTCTGGATGGTTTGTATACCGATATCTCCTGTTCAAGCCTCAAAGAGAGGAATTGGTTCGGAACATCAACAACTCGATTACGAACATCTTAGGCCAGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_5015.p1 GENE.R_Transcript_5015~~R_Transcript_5015.p1 ORF type:complete len:213 (+),score=22.38,CAAD|PF14159.2|1.2e-29 R_Transcript_5015:96-641(+)
MEVVVSTLQCQGHRSFAPPNSIFLPFPSTIYPKVPDMASIISTLPLSLYINGENPSLKPTSIFPVCALPERQRRVGVVVKATGDRSESSTSLSIVKSMQNVWDKPEDRVGVIGVGLTAVIALWASLNLVSAIDKLPLVPSFLEFVGILFSGWFVYRYLLFKPQREELVRNINNSITNILGQ*

Click here to download the sequence:
Link to NCBI Protein BLAST