Transcript Information: R_Transcript_5017.p1


Annotated TAIR IDAT1G52220.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: photosystem I P subunit (TAIR:AT2G46820.2); Has 291 Blast hits to 291 proteins in 50 species: Archae - 0; Bacteria - 90; Metazoa - 0; Fungi - 0; Plants - 200; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:19453770-19454605 | Reverse length=156
E-Value5E-36
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 17.3475902148232
Replicate 24.3594013576212
Replicate 35.8237468464794
Condition 2: 8 Hour
Replicate 14.5651612613508
Replicate 22.2739879838494
Replicate 34.9993842810388
Condition 3: 24 Hour
Replicate 13.4047595464815
Replicate 24.859633314873
Replicate 37.1413273766572


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_5017.p1 GENE.R_Transcript_5017~~R_Transcript_5017.p1 ORF type:complete len:236 (+),score=31.95,CAAD|PF14159.2|1.2e+03,CAAD|PF14159.2|1.5e-29 R_Transcript_5017:96-710(+)
ATGGAAGTAGTGGTCTCCACTCTCCAGTGTCAAGGTCACCCAACAGTATCTTCCTTCCCTCTCCATCCACAAACTATCCAAAGGAAAATTAACTCCTCCCCCCTTTTCTCAACACTTGCTAGTCTTTTTCTTCTTCTCTTTATACACCTTGTTTCTGTTCTGTTCCAGGTTCCTGGCATGGCTTCAATTATTTCCACTTTGCCTTTATCCCTTTACATTAATGGGGAAAATCCCTCTTTAAAACCCACTTCTATATTCCCTGTTTGTGCTCTCCCAGAAAGGCAAAGACGGGTGGGAGTTGTAGTGAAAGCAACAGGGGACAGATCTGAATCTTCAACATCTCTGAGTATTGTCAAGTCCATGCAGAATGTTTGGGATAAACCTGAGGATCGAGTTGGTGTTATTGGTGTGGGGTTGACCGCTGTTATAGCACTCTGGGCATCATTAAATTTGGTTTCAGCAATTGACAAGCTTCCCTTGGTACCAAGTTTCCTGGAATTCGTTGGCATATTGTTTTCTGGATGGTTTGTATACCGATATCTCCTGTTCAAGCCTCAAAGAGAGGAATTGGTTCGGAACATCAACAACTCGATTACGAACATCTTAGGCCAGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_5017.p1 GENE.R_Transcript_5017~~R_Transcript_5017.p1 ORF type:complete len:236 (+),score=31.95,CAAD|PF14159.2|1.2e+03,CAAD|PF14159.2|1.5e-29 R_Transcript_5017:96-710(+)
MEVVVSTLQCQGHPTVSSFPLHPQTIQRKINSSPLFSTLASLFLLLFIHLVSVLFQVPGMASIISTLPLSLYINGENPSLKPTSIFPVCALPERQRRVGVVVKATGDRSESSTSLSIVKSMQNVWDKPEDRVGVIGVGLTAVIALWASLNLVSAIDKLPLVPSFLEFVGILFSGWFVYRYLLFKPQREELVRNINNSITNILGQ*

Click here to download the sequence:
Link to NCBI Protein BLAST