Transcript Information: R_Transcript_5018.p1


Annotated TAIR IDAT1G52220.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: photosystem I P subunit (TAIR:AT2G46820.2); Has 291 Blast hits to 291 proteins in 50 species: Archae - 0; Bacteria - 90; Metazoa - 0; Fungi - 0; Plants - 200; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:19453770-19454605 | Reverse length=156
E-Value1E-25
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 118.728298479581
Replicate 213.997533610865
Replicate 313.600875447716
Condition 2: 8 Hour
Replicate 17.2692411562134
Replicate 27.337164354139
Replicate 37.7522503691236
Condition 3: 24 Hour
Replicate 113.870341866738
Replicate 213.325052246391
Replicate 317.441764672371


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_5018.p1 GENE.R_Transcript_5018~~R_Transcript_5018.p1 ORF type:5prime_partial len:192 (+),score=18.47,CAAD|PF14159.2|0.0054,CAAD|PF14159.2|3e-07 R_Transcript_5018:3-578(+)
TTCCAATTACAGGGGTTTCAACTTTCAAGCCCTGTGATTGGTCTGACGTTGGGCGTTCAATACGAGCCACTCATGAAGTACAGAGTCAAGACAATGGAAGTAGTGGTCTCCACTCTCCAGTGTCAAGGTCACCGGTCATTCGCGCCTCCCAACAGTATCTTCCTTCCCTCTCCATCCACAAACTATCCTAAGGTTCCTGGCATGACTTCGATTATTTCCACTTTGCCTTTACCCCTTTACATTAATGGGGCAAAACCCTCTTTGAAACCCACTTCTATATTCCCTGTTTGTGCTCTCCCAGAAAGGCAAAGACGGGTGGGAGTTGTAGTGAAAGCAACAGGGGACAGATCTGAATCTTCAACATCTCTGAGTATTGTCAAGTCCATGCAGAATGTTTGGGATAAACCTGAGGATCGAGTTGGTGTTATTGGTGTGGGGTTGACCGCTGTTATAGCACTCTGGGCATCATTAAATTTGGTTTCATGGTTTGTATACCGGTATCTCCTGTTCAAGCCTCAAAGAGAGGAATTGGTTCGGAACATCAACAACTCGATTACGAACATCTTAGGCCAGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_5018.p1 GENE.R_Transcript_5018~~R_Transcript_5018.p1 ORF type:5prime_partial len:192 (+),score=18.47,CAAD|PF14159.2|0.0054,CAAD|PF14159.2|3e-07 R_Transcript_5018:3-578(+)
FQLQGFQLSSPVIGLTLGVQYEPLMKYRVKTMEVVVSTLQCQGHRSFAPPNSIFLPSPSTNYPKVPGMTSIISTLPLPLYINGAKPSLKPTSIFPVCALPERQRRVGVVVKATGDRSESSTSLSIVKSMQNVWDKPEDRVGVIGVGLTAVIALWASLNLVSWFVYRYLLFKPQREELVRNINNSITNILGQ*

Click here to download the sequence:
Link to NCBI Protein BLAST