Transcript Information: R_Transcript_50224.p1


Annotated TAIR IDAT4G16144.1
Annotated Gene Nameassociated molecule with the SH3 domain of STAM 3
Annotated Gene Symbol(s)AMSH3
Annotation TypeHomolog
Chromosome Positionchr4:9138053-9141422 | Reverse length=507
E-Value3E-36
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.06637293827
Replicate 21.1884698348848
Replicate 33.0254181730767
Condition 2: 8 Hour
Replicate 12.1559881085625
Replicate 23.6564964017033
Replicate 33.4248321925258
Condition 3: 24 Hour
Replicate 13.465329392861
Replicate 23.6065203217296
Replicate 32.2025363206941


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_50224.p1 GENE.R_Transcript_50224~~R_Transcript_50224.p1 ORF type:3prime_partial len:159 (+),score=24.94,USP8_dimer|PF08969.7|4.2e-11 R_Transcript_50224:187-660(+)
ATGAGCCCTCCGGCGAAACCGATCAATGTCGCGGCTCTTTCTAGAAAGATCGATGTCGACAATCGCCTTTCTTTGGGCTATTATTATCGAATCGCTGACACCCTTCTTAAACAGGCCAATGTATATCGAGAGGAGAACAATATAGTGGATGTGTATGTTATGCTTGTCAGATATTCAAGTTTGGTGTCTGAAACAATACCATTCCATCGGGATTACCAGACTCTGCAACCCGGAGAAAAGACTTATTACAAAAAGAAATTGCTTGCAGTGTTGGATGAGCTGGAATCTTTGAAGCCTGAGTTCTTGCGTCGAGTGGATCAGCTGAACAAAGCTTATAGAGAAGCACAGCAGAATCAACTTGATGTCCGAGAGACATCATCAAATGGCTCTGAAACATCTGTCGCCTGGCCTTCTGCTTATGCTCCTAGTTATGAAACTAAGCAGCTGCAACCAGTAAGCAAGAAATTTCAGTCC

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_50224.p1 GENE.R_Transcript_50224~~R_Transcript_50224.p1 ORF type:3prime_partial len:159 (+),score=24.94,USP8_dimer|PF08969.7|4.2e-11 R_Transcript_50224:187-660(+)
MSPPAKPINVAALSRKIDVDNRLSLGYYYRIADTLLKQANVYREENNIVDVYVMLVRYSSLVSETIPFHRDYQTLQPGEKTYYKKKLLAVLDELESLKPEFLRRVDQLNKAYREAQQNQLDVRETSSNGSETSVAWPSAYAPSYETKQLQPVSKKFQS

Click here to download the sequence:
Link to NCBI Protein BLAST