Transcript Information: R_Transcript_50231.p2


Annotated TAIR IDAT4G16144.1
Annotated Gene Nameassociated molecule with the SH3 domain of STAM 3
Annotated Gene Symbol(s)AMSH3
Annotation TypeOrtholog
Chromosome Positionchr4:9138053-9141422 | Reverse length=507
E-Value2.9E-29
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.5328311525262
Replicate 21.1288333557149
Replicate 33.6946350961536
Condition 2: 8 Hour
Replicate 12.1063109632039
Replicate 20.7213187690705
Replicate 34.29392939407
Condition 3: 24 Hour
Replicate 12.4685814223338
Replicate 20.94861328561623
Replicate 32.5888682962997


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_50231.p2 GENE.R_Transcript_50231~~R_Transcript_50231.p2 ORF type:complete len:93 (+),score=0.17,USP8_dimer|PF08969.7|2.1e-08 R_Transcript_50231:187-465(+)
ATGAGCCCTCCGGCGAAACCGATCAATGTCGCGGCTCTTTCTAGAAAGATCGATGTCGACAATCGCCTTTCTTTGGGCTATTATTATCGAATCGCTGACACCCTTCTTAAACAGGCCAATGTATATCGAGAGGAGAACAATATAGTGGATTTGTATTTTATGCTTGTCAGATATTCGAGTTTGGTGTCTGAAACAATACCATTTCATCGGGATTATCAGACTCTGCACACCGGAGAAAAGACTTATTACAAAAAGTGTTGGATGAGCTGGAATCTTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_50231.p2 GENE.R_Transcript_50231~~R_Transcript_50231.p2 ORF type:complete len:93 (+),score=0.17,USP8_dimer|PF08969.7|2.1e-08 R_Transcript_50231:187-465(+)
MSPPAKPINVAALSRKIDVDNRLSLGYYYRIADTLLKQANVYREENNIVDLYFMLVRYSSLVSETIPFHRDYQTLHTGEKTYYKKCWMSWNL*

Click here to download the sequence:
Link to NCBI Protein BLAST