Transcript Information: R_Transcript_50377.p1


Annotated TAIR IDAT2G29200.1
Annotated Gene Namepumilio 1
Annotated Gene Symbol(s)APUM1, PUM1
Annotation TypeOrtholog
Chromosome Positionchr2:12549483-12553185 | Reverse length=968
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 132.655824680254
Replicate 218.983232303518
Replicate 324.839424948464
Condition 2: 8 Hour
Replicate 125.237109125876
Replicate 227.12034087162
Replicate 337.95653189172
Condition 3: 24 Hour
Replicate 133.809388208776
Replicate 227.172586456751
Replicate 339.095679608523


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_50377.p1 GENE.R_Transcript_50377~~R_Transcript_50377.p1 ORF type:complete len:1043 (+),score=272.65,NABP|PF07990.8|5e-138,PUF|PF00806.15|2.7e-06,PUF|PF00806.15|6.5e-07,PUF|PF00806.15|9.2e-06,PUF|PF00806.15|3.8e-06,PUF|PF00806.15|1e-08,PUF|PF00806.15|1.8e-06,PUF|PF00806.15|1.6e-05,PUF|PF00806.15|1.9e-06 R_Transcript_50377:663-3791(+)
ATGATATCTGAATTGGGTAGGAGACCAATGATAGGTGGGAATAATAATAACAACAATAATGAGGGAAGTTCTTTTGGGGATGATTTAGAGAAGGAGATAGGGATGTTGCTCCGTGAGCAGAGGCACCACAACCACCCTGGTGGTGCAGATGATCGTGAGCGGGAGCTCAACATATACAGGAGTGGGTCTGCCCCTCCCACTATCGAGGGTTCGTTGAGTGCTGTAGGAGGTTTGTTCGGGAACGTCACTGGTGGCGGAGGCGGTGGTGGTTTCTCGGATTTTGCTAGGCTTAGGGATGGCAATGGGGAGATGTCTGAGGACCAGCTAAGGGCTGACCCTACTTATTTATCCTACTATTACACACACGTTAACTTGAACCCTAGGTTGCCCCCACCCTTGATGTCTAAGGAGGATTGGAGGTTTGCTCAAAGGTTACAAGGTGGTGGGAGCTCTGTTCTGGGTGGAATTGGGGATAGGAGGAAAGTGCATAATAAGTCTGAGAATGGCCCTGGTCCTGGTAGGTCTCTCTTTTCGATGCCTCCTGGGTTTAGCTCCAAGAAAGATGAGAGGGAGGTTGACCCCGAGAAGGCCCAGGGGCCGGCTGAATGGGGTAAAGATGGCTTACCTGGCTTGCCTAGTATAGGACTCGGGAGCAAACAGAAGAGTCTGGCTGAGATTTTTCAGAATGACCTGGATCGCTCTAATCCTTCCTCAAGACAACCTTCTCGTCCAGCCAGCCGTAATGCTTTTGATGAAAACGTTGATGCTCTAAGTTCAGCTGAAGCTGAGTTGGCACATTTGCGACGAGAGGGCGCTAATCTTCAGGGTTCTTCTGCTGCCCAGAATGTTGCTCCTTCCGCATCATATTCCTATGCTGCTGCTTTGGGGGGATCATTATCTAGAAGCACTACCCCTGATCCTCAGCATATAGCTAGGGCTCCAAGTCCTTGCCCTACACCTATAGGCGAAGGAAGAGCAGGAGCATCAAAGAAGAATATTAATAGTCCAAACTCATTTAATGGCATGTCATCTGGAATGGGTGACTCTGCTGATCTGGTAGCTGCATTGTCTGGAATGAATCTCACTTCAAATGGTAATGCTGATGCTGACAGTCACTTACAATCAAAAATGGAACGAGAGGTTTCTGATCACCGCAACTACCTTTTCAATATGCAAAGTGGTCAGGAGCATGGCAAGCAGCAATCATATATGAAAAAGTCTGAATCCGGTCATTTGCACATGCCTTCTGCCCATCAGTCAGCATCTAGGGCCAATATAGGTGGGTCTGACCTTAGGAGTCCCCAGGTTGAGCGTCCAAAACCTGGTGCTAATTCTGGTGGTTTGTATTCTAAGGGATCGTCTCTGTCCTCTATAAATGGTGGTGGTTTATCGCCCCATTATACCCCTTTAGATGGAACTGGGTCATCATTCGGAAATTATGGTTTGACTGGGTTTTCCTTGAACTCAAACGTGCCATCTATGATGGCAAGCCAACTCGGTAACTTCAATCTGCCTCCATTACTAGAAAATGTTGCTGCTGCTTCAGCTATGGGAGTTCCCGGATTGGATTCGAGAGTTCTTGCTGGTGGTTTACCTGCTGGACAGAATTTGACTGGAGCACCAGAATCTGGTCGGATGGGCAATCATATGGCAGCAAATGCTCTGCAGGCGTCTCTTGCAGATGCTATGTATCATCAATACCTGAGATCAGCCGAATATGCTGCCCATGCTGCTGCTCTAGGTGATCAGTCTCAAGATAAGTATTATATGGAGTTGCTTCAGAAAGCATATTTAGGTTCTGTGATGTCACCTCAGAAGTCGCAATATGGCGCTCCTTTGGGCAATAAATCTAGTGGTTCTAATCATGGTTACTATGGAAGTCATGCATTTGGGGTTGGCATGGGATATCCTGGAAGCCCATTGACAAGTCCTGTTATCCCAACCTCACCTGTTGGGCCAGGCAGTCCTATCAGGCACAATGAGTTTAACATGCGTTTTCCTAGTACAATGAGGAACTTAGGTGGTGGTGTCATGGGACCTTGGCACATGGATGGAGGCTTTGGATCTTCTCTGTTGGAGGAGTTCAAGAGCAATAAGACCAAGTGTTTTGAGCTTTCAGAAATAGCAGGCCATGTTGTTGAGTTCAGTGCCGATCAGTATGGAAGTCGTTTTATTCAGCAAAAACTTGAAACTGCTACAACAGAGGAGAAAAACATGGTCTTTGAGGAAATCATCCCTCAAGCTCTTTCGCTGATGACTGATGTGTTTGGAAACTATGTGATTCAGAAGTTTTTTGAGCATGGAATGGATTCTCAAAGAAGAGAGCTCGCTAGCAAGCTTGATGGTCATGTGTTGAACCTCAGCCTGCAAATGTATGGCTGTCGTGTTATCCAAAAGGCTATTGAAGTTGTTGATCTGGATCAAAAGATTAAGATGGTTCAAGAGCTTGATGGCCATATAATGCGATGTGTACGTGATCAGAATGGGAACCATGTAATCCAGAAGTGCATTGAATGTGTACCCGAAGAGCATATTCAATTTATAGTGGAATCATTTTTCGATCAAGTTGTTACCCTGTCAACCCATCCATATGGCTGTCGCGTGATTCAGAGGGTTCTGGAGCATTGCGAAGATGCACAGACTCAAAGCAAAGTCATGGATGAAATTCTGGGTTCAGTTAGCATGTTGGCGCAAGATCAATATGGCAATTATGTGGTTCAGCATGTGCTGGAACATGGAAAACCACATGAACTTACAGCTATTATCAAAGAATTAGCTGGGAAAATAGTCCAAATGAGTCAGCAGAAGTTTGCCTCCAATGTGGTGGAGAAATGTCTTACTTTTGGCAATACAGAAGAACGAGAGCTTATGGTGAATGAGATGCTTGGTACTACAGATGAGAATGAGCCTCTTCAGGCTATGATGAAAGACCAATTTGCAAACTATGTTGTACAGAAGGTGTTGGAAACCTGCAGTGATCAGCAAAGGGAGCATATCCTAGCTCGAATCAAGGTTCATTTAAATGCATTGAAAAAATACACTTATGGGAAGCATATTGTTGCACGTGTAGAGAAGCTTGTTGCTGCAGGAGAAAGGAGAATTGCTGGACAGTCTCCTCAACCTGCATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_50377.p1 GENE.R_Transcript_50377~~R_Transcript_50377.p1 ORF type:complete len:1043 (+),score=272.65,NABP|PF07990.8|5e-138,PUF|PF00806.15|2.7e-06,PUF|PF00806.15|6.5e-07,PUF|PF00806.15|9.2e-06,PUF|PF00806.15|3.8e-06,PUF|PF00806.15|1e-08,PUF|PF00806.15|1.8e-06,PUF|PF00806.15|1.6e-05,PUF|PF00806.15|1.9e-06 R_Transcript_50377:663-3791(+)
MISELGRRPMIGGNNNNNNNEGSSFGDDLEKEIGMLLREQRHHNHPGGADDRERELNIYRSGSAPPTIEGSLSAVGGLFGNVTGGGGGGGFSDFARLRDGNGEMSEDQLRADPTYLSYYYTHVNLNPRLPPPLMSKEDWRFAQRLQGGGSSVLGGIGDRRKVHNKSENGPGPGRSLFSMPPGFSSKKDEREVDPEKAQGPAEWGKDGLPGLPSIGLGSKQKSLAEIFQNDLDRSNPSSRQPSRPASRNAFDENVDALSSAEAELAHLRREGANLQGSSAAQNVAPSASYSYAAALGGSLSRSTTPDPQHIARAPSPCPTPIGEGRAGASKKNINSPNSFNGMSSGMGDSADLVAALSGMNLTSNGNADADSHLQSKMEREVSDHRNYLFNMQSGQEHGKQQSYMKKSESGHLHMPSAHQSASRANIGGSDLRSPQVERPKPGANSGGLYSKGSSLSSINGGGLSPHYTPLDGTGSSFGNYGLTGFSLNSNVPSMMASQLGNFNLPPLLENVAAASAMGVPGLDSRVLAGGLPAGQNLTGAPESGRMGNHMAANALQASLADAMYHQYLRSAEYAAHAAALGDQSQDKYYMELLQKAYLGSVMSPQKSQYGAPLGNKSSGSNHGYYGSHAFGVGMGYPGSPLTSPVIPTSPVGPGSPIRHNEFNMRFPSTMRNLGGGVMGPWHMDGGFGSSLLEEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFEEIIPQALSLMTDVFGNYVIQKFFEHGMDSQRRELASKLDGHVLNLSLQMYGCRVIQKAIEVVDLDQKIKMVQELDGHIMRCVRDQNGNHVIQKCIECVPEEHIQFIVESFFDQVVTLSTHPYGCRVIQRVLEHCEDAQTQSKVMDEILGSVSMLAQDQYGNYVVQHVLEHGKPHELTAIIKELAGKIVQMSQQKFASNVVEKCLTFGNTEERELMVNEMLGTTDENEPLQAMMKDQFANYVVQKVLETCSDQQREHILARIKVHLNALKKYTYGKHIVARVEKLVAAGERRIAGQSPQPA*

Click here to download the sequence:
Link to NCBI Protein BLAST