Transcript Information: R_Transcript_50576.p1


Annotated TAIR IDAT5G22950.1
Annotated Gene NameSNF7 family protein
Annotated Gene Symbol(s)VPS24.1
Annotation TypeOrtholog
Chromosome Positionchr5:7681380-7682720 | Forward length=229
E-Value1.8E-72
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.58292889276547
Replicate 20.25145269959638
Replicate 30
Condition 2: 8 Hour
Replicate 10.19549592772252
Replicate 20.35705998948001
Replicate 30.76084595414796
Condition 3: 24 Hour
Replicate 10.36659173217891
Replicate 20.17608989134193
Replicate 30.6553204996077


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_50576.p1 GENE.R_Transcript_50576~~R_Transcript_50576.p1 ORF type:complete len:501 (+),score=115.53,PPR_2|PF13041.2|0.0006,PPR_2|PF13041.2|1.5e-06,PPR_2|PF13041.2|0.0048,PPR_2|PF13041.2|0.54,PPR_2|PF13041.2|2.2e-12,PPR_2|PF13041.2|7.5e+03,PPR_2|PF13041.2|5.2e-09,PPR_2|PF13041.2|0.017,PPR_2|PF13041.2|2.4,PPR|PF01535.16|73,PPR|PF01535.16|6.5e-07,PPR|PF01535.16|0.00019,PPR|PF01535.16|3.3,PPR|PF01535.16|2.8e-06,PPR|PF01535.16|20,PPR|PF01535.16|9.5e-07,PPR|PF01535.16|0.0012,PPR|PF01535.16|0.1,PPR_1|PF12854.3|3.5e+02,PPR_1|PF12854.3|0.0014,PPR_1|PF12854.3|0.063,PPR_1|PF12854.3|10,PPR_1|PF12854.3|5.6e-07,PPR_1|PF12854.3|1.9,PPR_1|PF12854.3|0.043,PPR_1|PF12854.3|0.13,PPR_3|PF13812.2|1.4e+04,PPR_3|PF13812.2|0.1,PPR_3|PF13812.2|0.031,PPR_3|PF13812.2|23,PPR_3|PF13812.2|0.13,PPR_3|PF13812.2|1.1e+03,PPR_3|PF13812.2|0.071,PPR_3|PF13812.2|0.0016,Snf7|PF03357.17|7.6e-19 R_Transcript_50576:312-1814(+)
ATGGAGAAGGTGAAGAGCTTGTTACTCCCAAAACCAAACCCTCAGCAGCTGTTGAGGGATTGGCAAAGGCGTCTACGCCAAGAGTGTCGCAACATTGACCGCCAAATCCGAGATATTCAGAGGGAAGAAAAAAGTGTACAGAAGGCCATCAGAGAGGCTGCCAAGAGAAATGATATGGGTTCTGCTAAGGCTCTTGCTGTAGAAATTGTGAGGTCACGAAAAACTGTCAATCGCCTATATGAAAATAAAGCTCAACTGAATTCGATATCAATGCACCTCGGAGAAAGTGTTGCAATTGCTCGTACAGTGGGTCATTTGCAAAAGAGTGCAGAGGTCATGAAACTTGTTAATAACCTAATGAAAGCCCCAGAGGTGGCTGTCACAATGCAGGAATTTAACAAAGAGATGACCAAGGGTGCAGTGGAAATGTTTAGGAGGATGGAGTTTGAAGGATGGGAGCCTAACATTGTAACCTGGACATCATTGTTATCGAGCTACGCACGTTGTGGTTATTATGAAGAAACATTGAAATGGTTTGTTTTTATGAGAAGGAGAGGAATAGGGACCAATGCTGAGGCACTTGCTGTTGTTTTATCATCTAGTGCTGATCTTAAGGCAGTCAAAGAGGGTACTACAGTTCATGGGTATGTTGTAAAGGGTGGGTTTGAGGGTTTTCTAATTGTCAAGAACTCCCTCATATGCATGCATGGTAAAAATGGGGATTTGAAAGGTGCGAATGATTTGTTTTCAGAGATGGAAACAAGAAATTTGGTAACTTGGAATTCTTTGGTAACAGCTTATGCAGCGTGTGATGAGGCTTTTGAGATATTTTCTCAGCTGGAAAAATCAGATGATTCTGCAATGTTGAGACCAGATGTAGTAACCTGGAGTGCTGTAATTGGCGGGTTTGCTTCCAAGGGACGAGGGAGGGAGGCGCTTGATCTATTCAGAAAGATGCAGCTGGTGAAAGTGAAACCCAATCCGATTACAATTTCCTCTGTTCTATCTGCTTGTGCAGATCTGGCAGTGTTGCCTCTTGGCCAAGAAGTTCACGCCTATGTCATTAGATTATCTATGGATGGTAGTATCTTGGTTGGAAATGGCTTGATTAACATGTACACCAAGTGTGGATGTCTTAAACAAGGGGGTTTGGTATTTGAAAAATTGGATGCTCGTGATCTGGTGTCATGGAATTCGATGATTGCAGGATATGGAGTGCATGGATATGGCAAATTCGCATTGGGATTTTTTGCGAAAATGCTTAGAGATGGAATCAAACTAGATGAGGTCACCTTTGTTGCTCTTCTTTCTGCTTGCGCTCACAGTGGGCTTGTATCTGAGGGGCGTAAAATATTTGCTAAGATGAAGGATGAGTTTGATGTTGAATTATTGATGGAACATTATGCTTGTGTTGTTGATCTTCTTGCTCGAGCTGGGCGTGTGGAAGAAGCCAAAGAAATTATCAGCCACATGCCAATGGAACCCAATGAAGTTCTTTGGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_50576.p1 GENE.R_Transcript_50576~~R_Transcript_50576.p1 ORF type:complete len:501 (+),score=115.53,PPR_2|PF13041.2|0.0006,PPR_2|PF13041.2|1.5e-06,PPR_2|PF13041.2|0.0048,PPR_2|PF13041.2|0.54,PPR_2|PF13041.2|2.2e-12,PPR_2|PF13041.2|7.5e+03,PPR_2|PF13041.2|5.2e-09,PPR_2|PF13041.2|0.017,PPR_2|PF13041.2|2.4,PPR|PF01535.16|73,PPR|PF01535.16|6.5e-07,PPR|PF01535.16|0.00019,PPR|PF01535.16|3.3,PPR|PF01535.16|2.8e-06,PPR|PF01535.16|20,PPR|PF01535.16|9.5e-07,PPR|PF01535.16|0.0012,PPR|PF01535.16|0.1,PPR_1|PF12854.3|3.5e+02,PPR_1|PF12854.3|0.0014,PPR_1|PF12854.3|0.063,PPR_1|PF12854.3|10,PPR_1|PF12854.3|5.6e-07,PPR_1|PF12854.3|1.9,PPR_1|PF12854.3|0.043,PPR_1|PF12854.3|0.13,PPR_3|PF13812.2|1.4e+04,PPR_3|PF13812.2|0.1,PPR_3|PF13812.2|0.031,PPR_3|PF13812.2|23,PPR_3|PF13812.2|0.13,PPR_3|PF13812.2|1.1e+03,PPR_3|PF13812.2|0.071,PPR_3|PF13812.2|0.0016,Snf7|PF03357.17|7.6e-19 R_Transcript_50576:312-1814(+)
MEKVKSLLLPKPNPQQLLRDWQRRLRQECRNIDRQIRDIQREEKSVQKAIREAAKRNDMGSAKALAVEIVRSRKTVNRLYENKAQLNSISMHLGESVAIARTVGHLQKSAEVMKLVNNLMKAPEVAVTMQEFNKEMTKGAVEMFRRMEFEGWEPNIVTWTSLLSSYARCGYYEETLKWFVFMRRRGIGTNAEALAVVLSSSADLKAVKEGTTVHGYVVKGGFEGFLIVKNSLICMHGKNGDLKGANDLFSEMETRNLVTWNSLVTAYAACDEAFEIFSQLEKSDDSAMLRPDVVTWSAVIGGFASKGRGREALDLFRKMQLVKVKPNPITISSVLSACADLAVLPLGQEVHAYVIRLSMDGSILVGNGLINMYTKCGCLKQGGLVFEKLDARDLVSWNSMIAGYGVHGYGKFALGFFAKMLRDGIKLDEVTFVALLSACAHSGLVSEGRKIFAKMKDEFDVELLMEHYACVVDLLARAGRVEEAKEIISHMPMEPNEVLW*

Click here to download the sequence:
Link to NCBI Protein BLAST