Transcript Information: R_Transcript_50740.p1


Annotated TAIR IDAT5G35840.1
Annotated Gene Namephytochrome C
Annotated Gene Symbol(s)PHYC
Annotation TypeOrtholog
Chromosome Positionchr5:14008049-14011619 | Forward length=1111
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 112.621728319752
Replicate 25.9191697982117
Replicate 310.174003134461
Condition 2: 8 Hour
Replicate 16.7943933763189
Replicate 28.5439185049211
Replicate 311.634409998706
Condition 3: 24 Hour
Replicate 19.4436370156513
Replicate 27.2539902911385
Replicate 310.57517646663


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_50740.p1 GENE.R_Transcript_50740~~R_Transcript_50740.p1 ORF type:complete len:1128 (+),score=222.49,PHY|PF00360.16|8.3e-60,PAS_2|PF08446.7|4.3e-39,PAS_2|PF08446.7|8.5e+03,PAS|PF00989.20|2.1e-16,PAS|PF00989.20|9.3e-18,GAF|PF01590.22|3e-31,GAF|PF01590.22|1.5e+04,GAF|PF01590.22|6.1e+02,PAS_4|PF08448.6|3.5e-05,PAS_4|PF08448.6|0.11,PAS_9|PF13426.2|0.22,PAS_9|PF13426.2|0.046 R_Transcript_50740:297-3680(+)
ATGTCTTCGAGGTCTATAGGCAGGACCAATTCAAGGAGCAGTTCTGTAAGGTCAAGGCATGATGCTCATGTCATGGCGCAAACCCCGATTGATGCTCAGCTTGCTTCAAGATTTAATGAGTCGAAGCGCCTTTTTGATTATTCTTCCTCTGTTGACCTCAACTTGTCAACTTCCACTAGCAATATCCCTTCTTCAACAGTATCGTCTTATCTCCGAAACATCCAAAGGGGAAGTTTAATCCAGTCGTTTGGTTGTTTGATTGCTATCGATGAGGAGAACTTCGCTGTCCTTGCTTTTAGTGAAAATACGCCTGAAATGTTGGACTTGGCTTCACATGCTGTTCCAAACATTGAGCAGCAAGAGGCTCTAACCTTTGGAACTGATGTCAGAACTCTATTTACTTCATCGGGTGCTTCTGCACTGCAAAAGGCTGTAAAATTTCCGGAAATTAACCTCCTCAACCCCATACTTTTACATTGTAAAAACTCAGGTAAACCCTTCTATGCTATTCTTCACAGAATTGATGTGGGGATGGTTATAGATTTGGAGCCAGTGAATCCAGCTGATGCGCCAGTTCCTGCTTCCGGTTCCTTCAAATCTTATAAGCTTGCAGCCAAGGCAATATCGAGATTGCAATCTTTACCGAATCGAAACATCTTGCTTTTGTGTGATGTTTTAGTTAAAGAAGTGAGTGAATTGACGGGCTATGATCGTGTTATGGTGTATAAATTCCATGAAGATGAGCACGGTGAAGTGATTGCTGAGTCCCGTAGGTCCGATTTGGATCCTTATCTTGGCCTACATTATCCAGCGACTGATATACCACAAGCTTCAAGATTTCTTTTCTTGAAGAACAAGGTGAGAATGATATGTGATTGTCTAGCTCCACCTGTTAAGGTGATTCAAGATAAGAAACTGGCTCAATCATTGAGTCTTGGGGGATCAACTTTGAGGGCGCCCCATGGGTGCCATGCACAGTATATGGCTAACATGGGTTCAATTGCATCACTTGCGATGGCTGTGACGATCAATGATGATGATGATGAGGTTAAAAGTGATCAGCAAACAGGAAAAAAATTGTGGGGCTTGGTTGTTTGTCATCACACAAGTTCCAGGTTTGTTCCATTCCCGCTGAGGTATGCATGCGAGTTGTTAGTTCAAATCTTCAGTATGCAGATCAATAAGGAGGTTGAATTGGCTGCTCAAATGAAGGAAAAGCATATTTTAAGGATTCAAACTGTGCTCTGCGACATGCTTCTCAGAGAGTCCCCGATAGCCATTATCATCCAGTCACCAAATGTCATGGATTTGGTCAATTGTGATGGAGCTTCACTTTACTACAAGGGCAACGTTAGGCTGCTTGGTGTCACTCCTACTCAGAATCAAATAAAAGATATTGCAGAATGGCTCCTTCAAAATCATGGTCATACCAATGGATTCAGTACTGACAGCCTTATGGAAGCTGGTTACCCTGGTGCTGCAGAACTTGGTGAGACAGTTTGTGGTATGGCTGCTGTTAGAATCAGTTCGACAGATATCCTATTCTGGTTTAGGTCCCACACAGCTAAGGAAGTAAAATGGGGTGGTGCAAAACATGATCCTGTTGACAATGACGATAGGAGAAAAATGCACCCAAGATCATCATTCAAGGCTTTCCTAGAGGTAGTCAAGTGGAGAAGCCTTCCTTGGGAAGATATGGAAATGGACGCCATCCACTCATTGCAGCTAATATTACGAGGTTCTTTGCAAGAAACTGCTGTGGACAACTCAAAAGTCATAGCGGAGGATTCAAAAATGATTGTGAATGTGCCTCGAGCCGAGGACCTCCAGCATTCGGTTACTGAACTACGAACTGTCACCAAAGAGATGGTTCGTCTCATTGAGACTGCTGTTGTCCCGATATTCTCTGTTGATGTTTCTGGAACTATTAATGGATGGAATGTCAAAGTGGCTGAATTAACTGGATTGGCTATAGAGCAAGCAATTGGGTTACCGTTATTCACCGTGGTTGTTGATGAAGCCGTTGATGCAGTGAAAAACATGATCTCCCTGGCTATTCAAGGTATAGAAGAAAAAGATGTAGAAGTAAGGTTAAGAACATATGGTCCTCATGAAGGGAATGGTCCTGTTGCTATTGTACTTAGTACATGTTGTAATCGAGATGTGGATGGAAATGTTACAGGTCTTTGCTTTATTGGGCAAGATATTACTTCACAGAAAATGACTATGGACAAATATACTCAAGTACAGGGTGATTATACTGGAATTGTGAGGAATCCTTGTCACCTTATTCCTCCAATATTTATTACAGATGAACAGGGCCTATGTGTGGAGTGGAATGATGCGATGGAAAAATTTTCTGGTATGAGGAAAGAAGCAGTTATTGGTCGGATGCTTCTCGGGGACGTTTTTACTTTAGAAAATCTTGGTTGCCAGGTTAAAGATCATGACACATTAACCAGACTCAGGATATTGGTAAATAAGATTCTTGCAGGTGAGGATGCCGATAAGGTGCTTTTTGGGTTCTTTGATCAGTATGGTAACTGTACAGATGCACTGCTTTCTGGCAGTCCTCGCACTAATGCTGAGGGAAGGATTACTGGGGTTTTGTGTTTTCTGCATGTACCTAGTCCAGAGCTTCAATATGCCATGCAGATGAAGAGCCTCTCAGAAAAGGCTGCTGACAGTAGCCTAAAGAAACTGACTTATCTCCGTCAACAGATCAGAAATCCAATAGCAGGAATTTTGTGTACTCGCAGGTTGATGGAGTCATCTGATGTAAACAGAGAGCAAAAGCGGCTCCTGACGACTAGAACATTATGCGAGGATCAATTAATGAAGGTTGTCGAGGACACTGATATCCCAAGGATTGAGGAAGGCTTTATGGAGTTGAACCCTACAGAATTCAATCTTGGAGATGCTCTTGATGCAGTCATGAGCCAGGCGATGTCTTCAAGCCAGGATAGGCAGGTCCAGATCATGCGAGATTCACCTGCTGAAGTGTCCTCTATGTATCTGTATGGAGACTATTTGAGGCTCCAGCAAGTCCTTGCTGATTTCCTGTCAACAGCTGTCCTTTTCACTCCGGTGATCGAAGAACTCAAGCTCGTGGTAAATCCTAAAAGAGAACATCTCGGGACAAAGATGCAAATCCTAAATGTTGAATTCAGGGTTATGCACCCATCACCGGGGGTCCTGGAAGCTCTAATTCAAGAGATGTTTCACCACAAACCAGGAATGTCTAGAGAAGGCTTGGGCTTGTACATTAGCCACAAGCTTGTGAAAATCATGAATGGCACTGTGCGGTACCTTAGAGGAGAACAATCTTCTGCATTCATCATTCTCCTAGAGTTCCCATTTGCTCAAGATATTGGTGTCAGATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_50740.p1 GENE.R_Transcript_50740~~R_Transcript_50740.p1 ORF type:complete len:1128 (+),score=222.49,PHY|PF00360.16|8.3e-60,PAS_2|PF08446.7|4.3e-39,PAS_2|PF08446.7|8.5e+03,PAS|PF00989.20|2.1e-16,PAS|PF00989.20|9.3e-18,GAF|PF01590.22|3e-31,GAF|PF01590.22|1.5e+04,GAF|PF01590.22|6.1e+02,PAS_4|PF08448.6|3.5e-05,PAS_4|PF08448.6|0.11,PAS_9|PF13426.2|0.22,PAS_9|PF13426.2|0.046 R_Transcript_50740:297-3680(+)
MSSRSIGRTNSRSSSVRSRHDAHVMAQTPIDAQLASRFNESKRLFDYSSSVDLNLSTSTSNIPSSTVSSYLRNIQRGSLIQSFGCLIAIDEENFAVLAFSENTPEMLDLASHAVPNIEQQEALTFGTDVRTLFTSSGASALQKAVKFPEINLLNPILLHCKNSGKPFYAILHRIDVGMVIDLEPVNPADAPVPASGSFKSYKLAAKAISRLQSLPNRNILLLCDVLVKEVSELTGYDRVMVYKFHEDEHGEVIAESRRSDLDPYLGLHYPATDIPQASRFLFLKNKVRMICDCLAPPVKVIQDKKLAQSLSLGGSTLRAPHGCHAQYMANMGSIASLAMAVTINDDDDEVKSDQQTGKKLWGLVVCHHTSSRFVPFPLRYACELLVQIFSMQINKEVELAAQMKEKHILRIQTVLCDMLLRESPIAIIIQSPNVMDLVNCDGASLYYKGNVRLLGVTPTQNQIKDIAEWLLQNHGHTNGFSTDSLMEAGYPGAAELGETVCGMAAVRISSTDILFWFRSHTAKEVKWGGAKHDPVDNDDRRKMHPRSSFKAFLEVVKWRSLPWEDMEMDAIHSLQLILRGSLQETAVDNSKVIAEDSKMIVNVPRAEDLQHSVTELRTVTKEMVRLIETAVVPIFSVDVSGTINGWNVKVAELTGLAIEQAIGLPLFTVVVDEAVDAVKNMISLAIQGIEEKDVEVRLRTYGPHEGNGPVAIVLSTCCNRDVDGNVTGLCFIGQDITSQKMTMDKYTQVQGDYTGIVRNPCHLIPPIFITDEQGLCVEWNDAMEKFSGMRKEAVIGRMLLGDVFTLENLGCQVKDHDTLTRLRILVNKILAGEDADKVLFGFFDQYGNCTDALLSGSPRTNAEGRITGVLCFLHVPSPELQYAMQMKSLSEKAADSSLKKLTYLRQQIRNPIAGILCTRRLMESSDVNREQKRLLTTRTLCEDQLMKVVEDTDIPRIEEGFMELNPTEFNLGDALDAVMSQAMSSSQDRQVQIMRDSPAEVSSMYLYGDYLRLQQVLADFLSTAVLFTPVIEELKLVVNPKREHLGTKMQILNVEFRVMHPSPGVLEALIQEMFHHKPGMSREGLGLYISHKLVKIMNGTVRYLRGEQSSAFIILLEFPFAQDIGVR*

Click here to download the sequence:
Link to NCBI Protein BLAST