Transcript Information: R_Transcript_51147.p1


Annotated TAIR IDAT4G29090.1
Annotated Gene NameRibonuclease H-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr4:14333528-14335255 | Forward length=575
E-Value2E-49
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.72432384740947
Replicate 20.33327460978251
Replicate 30.49345579855657
Condition 2: 8 Hour
Replicate 10.49971152953562
Replicate 20.53240194859966
Replicate 30.32928091828366
Condition 3: 24 Hour
Replicate 10.85896557654675
Replicate 20.30007154953166
Replicate 30.64521578442101


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_51147.p1 GENE.R_Transcript_51147~~R_Transcript_51147.p1 ORF type:complete len:882 (+),score=128.25,RVT_1|PF00078.23|4.4e-41,zf-RVT|PF13966.2|1.6e+04,zf-RVT|PF13966.2|1.5e-16,RVT_3|PF13456.2|1.2e-13 R_Transcript_51147:986-3631(+)
ATGATGGATGAACTTAATGAAACGTTTATTGTCTTAATCCCCAAAAAGAAAAATCCTAAGTACATAACAGAGTTTAGACCCATAAGTCTATGCAACGTTGTTTACAAGCTCATATCCAAAGTCTTGGCAAACCGGCTCAAACCTTTGTTAAACTCCATAGTCTCCCTCAACCAAAGTGCTTTTACCCCTGGTCGTCTTATTACGGATAACGTTCTCATGGCTTTTGAGGCTTTCCATTTCATGAAGGCTAGCAAGGCTAAAGAGGGGTATGCGGCTCTAAAAGTTGATATGGCAAAGGCGTACGATAGAGTTGAATGGGATTTTCTTGAGTCGGTCCTTAGGAGATTGGGGTTTGCGGAGCACTGGATAGGGAGAGTGATGGGTTGTGTCAGTAATGTTTCCTTTTCGATTTTAATCAATGGTCAGCCTACAGCAAAGTTCAAACCGAAGCGTGGCCTCCGTCAGGGGGACCCGATTTCACCCTACCTTTTCCTCTTGGTTACTGAAGTGTTGTCAAGCTTGATTAAGCGAGCTAATGAGAATGAAGCTCTACATGGAGTGCGTATATGCTCAAATGCTCCTATTATTACTCACCTCTTTTTTGCAGATGACAGCTTGTTGTTCTTCAAGGCTAAGCGTAACCAAGCCCAAGCTTTGAAGGAAATTTTGTCCATCTATGAGGCAGCGTCGGGGCAGAAAGTGAGCTATGACAAGTCACAATTATGGATGAGTCCTGGAGTCGATAGACAACGAAGAAATGAGTTGCTACACATCTTGGGAGTAACAGAGGTCGATGCTCATGATAGGTACCTGGGACTACCAACAATTCTCGGGCAGTCTAAAAGAGGACTTTTCAGTCTGCTCAAGGAGAGGTTGTGGCGAAAACTGCAAGGTTGGAAGGGAGCCTTGTTGTCAAAGGCTGGCCGAGAGGTGATGATCAAGTCGGTTGCTCAGTCTATATCAACGTATGCCATGAGTGTTTTTAAGTTCTCGACAAGCTTTTGCAACGAAGTAAGATCTATGGTGTCTCAATTTTTTTGGGGGCAAAAGAAAGAGGAAAGGAGAATACATTGGGTGGCTTGGAAGAAGTTGTGTTTGGCCAAGGATAAAGGTGGAATGGGTTTTCGTGATTTACAAGATTTTAATTGGGCTCTCTTGGGCAAACAAGCTTGGAGACTTGCAAGAGGAGAGGGTGGTTTGCTAGGCCAGCTATTCAAAGCTCGATACTACCCCTATACTAGTTTCTTGGAAGCAGAATTGGGCTCCAACCCAAGCTACACTTGGAGAGGGATTTGGGAAGCTAGATGGGTGGTTCGTAAGGGTATGAAATGGATGATAGATGATGGTCGTGAGGTGAAAGTTTGGGGCGATGCTTGGGTGGGTAATGAAGGTAATGGAGTATTGATCTCACCCATAGGAGTGCAAGACCCGAACATGCGTGTATCTGAGCTGATTGATGAGAGAACCAAAGAGTGGAAGGTGAATACTCTCAAGCATCTGCTTCTCCCCTTTGAAGTTGATAAGGTACGTGCTATCCCTCTTAGTAGTCGTCCTGTTGCTGACACTATCTATTGGGGTTGGGGAAAAAATGGGTTATACTCTGTTAAAAGTGCTTACCACGACATAAGGGCACCAAGTGCAGCAGATATGGGAGAGTCCACCTCACATGATAATGGACAGATGTGGAAAAAGGTGTGGGGACTTGATATCCTGCCTAGAATTAAAATGTTCATATGGAGGGTTTGCTCAAATGCTCTTCCAACAAGGGCAGCGCTACATAAGAGAGTAAGGCATATAGAGGAGAATTGTGGGATTTGCCAAGGTGGGGAGGAAGATCCCATACATGCTCTTTGGTTTTGTCCACATGCTGAGGAAATCTGGAAAGAAGCGGCTTTAGACAACATGCAGGGACCTCATAGTGTTAATGCCAGAGATTGGATCGATGGCATGAGTCATATACTCAGCAACGAGGAGTTTCGCTGGTTTTGCACAACACTCTGGGCAATTTGGGGGGCAAGGAACAAGTGGCTTTTCCAACAAGTGCATGAGAGGGCTCGGGACGTGATAGCCTATGCAAAGAAATCAAGTGGACATGAGCTCCCAAAGTCTGATGAACGAATGGCAAGAAAACAACAAATGCTCCCCATGCGATGGATGCCACCAAGAAGGGGCCTGTTTAAACTCAATGTGGATGCTGGGCGATTGGGTATGACAAAAACGGGAATTGGAATTATCTGTAGGGATAATGATGACAAGCCTTTCTTTGGAGCTACGTACATTTTTGAGGAACTTTGGAGCACTGAGATAGCTGAGATGAAGGTAGTCCTCCTGGGCCTTCAACTAGCCTTCACTTATGGGATTGACAACTTTACTGTTGAAACTGATAATTTAGGTGTTTTTAATACTTTAAACAAGAAACTGGTAGGAGCTGGTTATTTTCATTTGTTAGCTGATGATGTGTTAGATTTTGTCTCTGTTTTTTCGTGTGTTTCTTGGTCTTTTGTTAAGAGGGAAGGGAATAAGGTAGCCCATGCCTTAGCCCATTCTCCTCCTTGGGTAGTCGGTGTTAACTTCTGGGATGTGTCTTTTCCGCCTTTTGTAGAAGCAGAGATTGCTTCCGATATTTCGTTGATTAATGCAAGTTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_51147.p1 GENE.R_Transcript_51147~~R_Transcript_51147.p1 ORF type:complete len:882 (+),score=128.25,RVT_1|PF00078.23|4.4e-41,zf-RVT|PF13966.2|1.6e+04,zf-RVT|PF13966.2|1.5e-16,RVT_3|PF13456.2|1.2e-13 R_Transcript_51147:986-3631(+)
MMDELNETFIVLIPKKKNPKYITEFRPISLCNVVYKLISKVLANRLKPLLNSIVSLNQSAFTPGRLITDNVLMAFEAFHFMKASKAKEGYAALKVDMAKAYDRVEWDFLESVLRRLGFAEHWIGRVMGCVSNVSFSILINGQPTAKFKPKRGLRQGDPISPYLFLLVTEVLSSLIKRANENEALHGVRICSNAPIITHLFFADDSLLFFKAKRNQAQALKEILSIYEAASGQKVSYDKSQLWMSPGVDRQRRNELLHILGVTEVDAHDRYLGLPTILGQSKRGLFSLLKERLWRKLQGWKGALLSKAGREVMIKSVAQSISTYAMSVFKFSTSFCNEVRSMVSQFFWGQKKEERRIHWVAWKKLCLAKDKGGMGFRDLQDFNWALLGKQAWRLARGEGGLLGQLFKARYYPYTSFLEAELGSNPSYTWRGIWEARWVVRKGMKWMIDDGREVKVWGDAWVGNEGNGVLISPIGVQDPNMRVSELIDERTKEWKVNTLKHLLLPFEVDKVRAIPLSSRPVADTIYWGWGKNGLYSVKSAYHDIRAPSAADMGESTSHDNGQMWKKVWGLDILPRIKMFIWRVCSNALPTRAALHKRVRHIEENCGICQGGEEDPIHALWFCPHAEEIWKEAALDNMQGPHSVNARDWIDGMSHILSNEEFRWFCTTLWAIWGARNKWLFQQVHERARDVIAYAKKSSGHELPKSDERMARKQQMLPMRWMPPRRGLFKLNVDAGRLGMTKTGIGIICRDNDDKPFFGATYIFEELWSTEIAEMKVVLLGLQLAFTYGIDNFTVETDNLGVFNTLNKKLVGAGYFHLLADDVLDFVSVFSCVSWSFVKREGNKVAHALAHSPPWVVGVNFWDVSFPPFVEAEIASDISLINAS*

Click here to download the sequence:
Link to NCBI Protein BLAST