Transcript Information: R_Transcript_51152.p1


Annotated TAIR IDAT1G52640.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:19608857-19610428 | Reverse length=523
E-Value2E-50
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 18.6719048213989
Replicate 25.5105232893349
Replicate 36.5823958609633
Condition 2: 8 Hour
Replicate 17.0830758755441
Replicate 26.8967470812852
Replicate 310.431960126659
Condition 3: 24 Hour
Replicate 18.9720166177234
Replicate 26.6334782486985
Replicate 37.8829281247829


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_51152.p1 GENE.R_Transcript_51152~~R_Transcript_51152.p1 ORF type:complete len:522 (+),score=105.70,PPR_2|PF13041.2|3.3e-05,PPR_2|PF13041.2|2.4e+02,PPR_2|PF13041.2|1.3,PPR_2|PF13041.2|3.9e-14,PPR_2|PF13041.2|1.9e-07,PPR_2|PF13041.2|0.0016,PPR_2|PF13041.2|1.7e-12,PPR_2|PF13041.2|0.00037,PPR_2|PF13041.2|2e-07,PPR_2|PF13041.2|6.2e-07,PPR_3|PF13812.2|0.071,PPR_3|PF13812.2|6.5e+03,PPR_3|PF13812.2|2.9e+02,PPR_3|PF13812.2|0.00039,PPR_3|PF13812.2|0.019,PPR_3|PF13812.2|0.03,PPR_3|PF13812.2|1.4e-05,PPR_3|PF13812.2|22,PPR_3|PF13812.2|0.11,PPR_3|PF13812.2|9.1,PPR|PF01535.16|7.7,PPR|PF01535.16|5.3e+02,PPR|PF01535.16|15,PPR|PF01535.16|1.2e-05,PPR|PF01535.16|95,PPR|PF01535.16|2.2,PPR|PF01535.16|24,PPR|PF01535.16|3.6e-08,PPR|PF01535.16|0.71,PPR|PF01535.16|0.0042,PPR|PF01535.16|0.0066,PPR_1|PF12854.3|2.9e+02,PPR_1|PF12854.3|3.6e+02,PPR_1|PF12854.3|0.43,PPR_1|PF12854.3|0.00046,PPR_1|PF12854.3|1.5e-05,PPR_1|PF12854.3|3.5e+02,PPR_1|PF12854.3|5.1,PPR_1|PF12854.3|2.6e-10,PPR_1|PF12854.3|22,PPR_1|PF12854.3|1.5,PPR_1|PF12854.3|1.6e+02,PPR_1|PF12854.3|2.6e+02 R_Transcript_51152:177-1568(+)
ATGGAATCTTCCCTCCAAATTCATGGCATTTCCCTTTCTTCTCACCTTCTTCACCAAACCCTTCTTAGACTGTCCCATTTTTCCAAAATTGCGCTTTCCTTCTTCTCATGGGCTCTACAGAACAACCACCCCACCACCACCAATACAAATGCCATTGATGTTAATTGCTTCAATTTAATGATTGACATTTTGGGTAAAGTTCATCAATTTGATGTTTCTTGGCAACTCATTATCCAAATGCAAACCCTCAATTTAAAGCCTCAAGCTTCCACCTTTTTGATCTTGACCCGCCGTTTGATCGCTTCCGGGTTGACCCGGCAAGCAATTCGAGCATTTGATGATATGCCCACCTTTACTGAGTCTGAACCCAGTAAAGATGATGTCTTGTATTTGCTTGATACTTTGTGTAAATATGGGTATATCAAGGTTGCAATGGAGGTTTTTAATAAGAGGAAAATGATGGGTTTTGATTTGTGTGTTAAAGTTTATACTGTTTTGATGAGTGGGTGGTGTAAAGTTAAGAGGGTTGATATGGGGGAAAAGTTGTTGAGGGAGATGCTGGATAAGGGTATTGAGCCTAATGTGGTTTGTTATAATGTTTTGCTTGATGGGATTTGTAGGAAAGCTAGTTTGCACCCTGATGAGAGGTTTGAGAGGACTATTAGGGCTGCAGATAAGGTGTTTGATGAAATGCGTGAGAGAGGGATCGAGCCTGATGTAACGAGTTATTCTATTGTGCTTCATGTTTGTAGCCGTGCTCATAAGCCTGCATTGACGCTGGATAGGTTGGAGATGATGAAAGCGAAAGGGATTTGCCCAAGTGTGGCTACTTATACTTCGGTTGTCAAGTGTCTTTGCTCTTGTGGGAGGTTAGAAGAGGCTGTGGGATTGCTTAATGAGATGGTTAGTAATGGGGTTACTCCGACTGCTATTACGTATAATTGTTTCTTCAAGGAGTTTAGAGGCAGGAAAGATGCCGAAAAGGCTTTGAGTTTGTATCGAGGGATGAAGGAAGAGGGCGCATGTGTGCCTAGCTTGCAGACATATAATATCTTGGTGCAAATGTTTGTGAAGTTGAATAGGATGGAGATTGTACAGGAGATATGGAATGATATGAAAGAAACTGGGGCTGGACCGGATTTGGATTCGCGTACTGTATTGATTCATGGTTTGATTGAGAAGCAGAAGTGGAGAGAGGCTTGTGAATATTTTGTTCAGATGATCGAGAAGGGAATTCTTCCACAAAAGGTCACCTTTGAGACACTTTATCGAGGTTTGATACAGGCTGACAAGTTGCGAACTTGGAGAAGACTGAAGAAGAAACTTGATGAGGAGTCAATATCATTTGGCTCTGAGTTTGAACATTATCACCTTCAACCATACAAGAGATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_51152.p1 GENE.R_Transcript_51152~~R_Transcript_51152.p1 ORF type:complete len:522 (+),score=105.70,PPR_2|PF13041.2|3.3e-05,PPR_2|PF13041.2|2.4e+02,PPR_2|PF13041.2|1.3,PPR_2|PF13041.2|3.9e-14,PPR_2|PF13041.2|1.9e-07,PPR_2|PF13041.2|0.0016,PPR_2|PF13041.2|1.7e-12,PPR_2|PF13041.2|0.00037,PPR_2|PF13041.2|2e-07,PPR_2|PF13041.2|6.2e-07,PPR_3|PF13812.2|0.071,PPR_3|PF13812.2|6.5e+03,PPR_3|PF13812.2|2.9e+02,PPR_3|PF13812.2|0.00039,PPR_3|PF13812.2|0.019,PPR_3|PF13812.2|0.03,PPR_3|PF13812.2|1.4e-05,PPR_3|PF13812.2|22,PPR_3|PF13812.2|0.11,PPR_3|PF13812.2|9.1,PPR|PF01535.16|7.7,PPR|PF01535.16|5.3e+02,PPR|PF01535.16|15,PPR|PF01535.16|1.2e-05,PPR|PF01535.16|95,PPR|PF01535.16|2.2,PPR|PF01535.16|24,PPR|PF01535.16|3.6e-08,PPR|PF01535.16|0.71,PPR|PF01535.16|0.0042,PPR|PF01535.16|0.0066,PPR_1|PF12854.3|2.9e+02,PPR_1|PF12854.3|3.6e+02,PPR_1|PF12854.3|0.43,PPR_1|PF12854.3|0.00046,PPR_1|PF12854.3|1.5e-05,PPR_1|PF12854.3|3.5e+02,PPR_1|PF12854.3|5.1,PPR_1|PF12854.3|2.6e-10,PPR_1|PF12854.3|22,PPR_1|PF12854.3|1.5,PPR_1|PF12854.3|1.6e+02,PPR_1|PF12854.3|2.6e+02 R_Transcript_51152:177-1568(+)
MESSLQIHGISLSSHLLHQTLLRLSHFSKIALSFFSWALQNNHPTTTNTNAIDVNCFNLMIDILGKVHQFDVSWQLIIQMQTLNLKPQASTFLILTRRLIASGLTRQAIRAFDDMPTFTESEPSKDDVLYLLDTLCKYGYIKVAMEVFNKRKMMGFDLCVKVYTVLMSGWCKVKRVDMGEKLLREMLDKGIEPNVVCYNVLLDGICRKASLHPDERFERTIRAADKVFDEMRERGIEPDVTSYSIVLHVCSRAHKPALTLDRLEMMKAKGICPSVATYTSVVKCLCSCGRLEEAVGLLNEMVSNGVTPTAITYNCFFKEFRGRKDAEKALSLYRGMKEEGACVPSLQTYNILVQMFVKLNRMEIVQEIWNDMKETGAGPDLDSRTVLIHGLIEKQKWREACEYFVQMIEKGILPQKVTFETLYRGLIQADKLRTWRRLKKKLDEESISFGSEFEHYHLQPYKR*

Click here to download the sequence:
Link to NCBI Protein BLAST