Transcript Information: R_Transcript_51178.p1


Annotated TAIR IDAT3G52660.1
Annotated Gene NameRNA-binding (RRM/RBD/RNP motifs) family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:19522598-19524735 | Forward length=471
E-Value2.1E-211
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 147.378624283187
Replicate 232.631434401503
Replicate 343.373948986216
Condition 2: 8 Hour
Replicate 152.021413434851
Replicate 251.220142701199
Replicate 352.423424174403
Condition 3: 24 Hour
Replicate 149.065060934299
Replicate 240.925642851107
Replicate 349.38561526827


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_51178.p1 GENE.R_Transcript_51178~~R_Transcript_51178.p1 ORF type:5prime_partial len:554 (+),score=185.61,RRM_1|PF00076.18|4.3e-18,RRM_1|PF00076.18|5.4e-09,RRM_1|PF00076.18|2e-15,RRM_6|PF14259.2|1.6e-13,RRM_6|PF14259.2|2.6e-06,RRM_6|PF14259.2|1.4e-11,RRM_5|PF13893.2|0.0011,RRM_5|PF13893.2|5.5,RRM_5|PF13893.2|2.8e-06,RRM_7|PF16367.1|0.0077,RRM_7|PF16367.1|5.1,RRM_7|PF16367.1|0.13,RRM_occluded|PF16842.1|0.0097,RRM_occluded|PF16842.1|0.0041,BRAP2|PF07576.8|0.12,BRAP2|PF07576.8|0.24,BRAP2|PF07576.8|1e+04 R_Transcript_51178:2-1663(+)
AAAAAAACAACTTCACTATTTCTAGGGTTTTCTTCTCCTCTTACACACAAACAAAATATCTCCTCTCTATCGAAGGCGTTAGCGGGCTTTTCTTCTTCCCCTTACTCTTTCAAATCCAAATCCCTCTTTTCTCTTTATCCTGCAAGCCTACCAGATCAGATACATAAGATGCCGAGAACAAGATCTGCTGCTGCTGCAGCTCCAAAGGCAGGTGTAGCTGAGAAGCCCACTGAGCCAGAAAAGCCCACTGCCTCTGAAGAGAAGGTAGATTTGGATGGAGAAAATGATCCTGAAGAAACATTAGAGGAGGAGGTAGAATATGAAGAAGTGGAAGAGGAGGTGGAGGAAGAGGTAGAGGAAGAGGAAGAGGTAGAAGAGGAGGTAGAGGAAGAGGAGGAGGAAGATGAAGAGGAAGAGGAGGAGGAAGCTGATGTTGCTGAGAAGGATGCTGATGTTGAAATGAAAGAATCAAGTGAAGGTGAGAAGAAAAAACATGCCGAGCTTCTTGCACTTCCTCCTCATGGATCAGAGGTGTTTCTTGGTGGCATACCCCACGATGCTACTGAAGCTGACCTGAGGGGATTTTGTGAATCTGTGGGAGAGGTCATAGAGGTCAGGATAATGAAAGGCAAAGAACCAGGTGAAAACAAAGGCTATGCTTTTGTGATGTTCAGGACCAAGGAATTGGCCTCTAAGGCAATGGAAAAGTTGAATAACACTGAGCTAAAGGGCAAGAAAGTAAAGTGTTCATCATCACAAGCGAAGCATAAGCTTTTTATTGGTAATGTCCCCAAGAGCTGGGGGGAGGAGGACTTGAGAAAAGTTGTTTCAGAGGTTGGGCCTGGTGTGAATGCAATCGAACTCTTGAAGGACCCACAAAATCCCAGTCGTAATCGGGGGTTTGTGTTCATTGAGTACTACAATCATGCTTGTGCAGAGTATTCAAGACAGAAAATGTCAAATGCAGATTTCAAGCTTGCTGATAATTCTCCTACAGTGAGTTGGGCTGATCCAAAGAATGCAGAATCTTCTGCTGCATCCCAGGTTAAGGCAGTGTATGTAAAGAATCTGCCTAGAGATGTTACTCAAGACAACTTACAGGAGCTTTTTGAACGCCATGGAAAAATTACGAAAGTTGTTCTACCACCTGCTAAAGCTGGGCAGGAGAACAGCAGGTTTGGCTTTGTTCACTTTTCAGAAAGATCCAGTGCTATGAAAGCTCTGAAGAATACTGAGAGATACGAACTTGATGGTCAAGTTTTGGACTGTTCTCTTGCAAAGCCGCAGGCTGACCAAAATTCATCTGGAGGATCCAATTCGCAGAAATCAGCTTTGCTTCCTGGGTACCCTCCTCGTGTTGGTTATGGCATGGTTGGCAGTGGGTTTGGAGCAGTTGGTGCAGGATATGCTGCTCCAGGCTTAGCACAACCGCTACTTTATGGTGGCCAGGGGGCGGGTCCTGCTGGAATGGCAATGATGCCAATGCTTCTACCAGATGGACGGATTGGATATGTATTGCAACAACCTGGAATGCAACCAAATACCCCTCCTCCGCAACATAGAGGTGGTAGAGGGGGTGGTGGTAGAGGTGGCGGGTCTTCTAGTGGGGGGAAGCGTGGTAATGATGGTGGTCGAGGACGGAGCAGATACAATCCTTACTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_51178.p1 GENE.R_Transcript_51178~~R_Transcript_51178.p1 ORF type:5prime_partial len:554 (+),score=185.61,RRM_1|PF00076.18|4.3e-18,RRM_1|PF00076.18|5.4e-09,RRM_1|PF00076.18|2e-15,RRM_6|PF14259.2|1.6e-13,RRM_6|PF14259.2|2.6e-06,RRM_6|PF14259.2|1.4e-11,RRM_5|PF13893.2|0.0011,RRM_5|PF13893.2|5.5,RRM_5|PF13893.2|2.8e-06,RRM_7|PF16367.1|0.0077,RRM_7|PF16367.1|5.1,RRM_7|PF16367.1|0.13,RRM_occluded|PF16842.1|0.0097,RRM_occluded|PF16842.1|0.0041,BRAP2|PF07576.8|0.12,BRAP2|PF07576.8|0.24,BRAP2|PF07576.8|1e+04 R_Transcript_51178:2-1663(+)
KKTTSLFLGFSSPLTHKQNISSLSKALAGFSSSPYSFKSKSLFSLYPASLPDQIHKMPRTRSAAAAAPKAGVAEKPTEPEKPTASEEKVDLDGENDPEETLEEEVEYEEVEEEVEEEVEEEEEVEEEVEEEEEEDEEEEEEEADVAEKDADVEMKESSEGEKKKHAELLALPPHGSEVFLGGIPHDATEADLRGFCESVGEVIEVRIMKGKEPGENKGYAFVMFRTKELASKAMEKLNNTELKGKKVKCSSSQAKHKLFIGNVPKSWGEEDLRKVVSEVGPGVNAIELLKDPQNPSRNRGFVFIEYYNHACAEYSRQKMSNADFKLADNSPTVSWADPKNAESSAASQVKAVYVKNLPRDVTQDNLQELFERHGKITKVVLPPAKAGQENSRFGFVHFSERSSAMKALKNTERYELDGQVLDCSLAKPQADQNSSGGSNSQKSALLPGYPPRVGYGMVGSGFGAVGAGYAAPGLAQPLLYGGQGAGPAGMAMMPMLLPDGRIGYVLQQPGMQPNTPPPQHRGGRGGGGRGGGSSSGGKRGNDGGRGRSRYNPY*

Click here to download the sequence:
Link to NCBI Protein BLAST