Transcript Information: R_Transcript_51897.p1


Annotated TAIR IDAT4G02070.1
Annotated Gene NameMUTS Homolog 6
Annotated Gene Symbol(s)MSH6, MSH6-1, ATMSH6
Annotation TypeOrtholog
Chromosome Positionchr4:906079-912930 | Forward length=1324
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 18.275349795722
Replicate 24.3039507778561
Replicate 35.8165769519316
Condition 2: 8 Hour
Replicate 15.2679654041626
Replicate 25.0379087435358
Replicate 37.8606697885148
Condition 3: 24 Hour
Replicate 19.5392550807635
Replicate 27.3313879968678
Replicate 38.993562867654


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_51897.p1 GENE.R_Transcript_51897~~R_Transcript_51897.p1 ORF type:internal len:1083 (+),score=271.94,MutS_V|PF00488.17|9.1e-79,MutS_I|PF01624.16|3.2e-34,MutS_III|PF05192.14|1e-31,MutS_IV|PF05190.14|4.3e-15,MutS_II|PF05188.13|5.9e-06 R_Transcript_51897:3-3248(+)
GGGAAGAATGCGGTGGTCGAGGATGAGGAGGAAGATGGAGGGGATTGTTTGGAGGATATGGAGTTGGAGGATGAGGAGAAGGAGAAGGAGGGAAAGAAGTTGAAGAGAAAGAGGGGAGAGAGTGCTGGAGGGACGGTAAAGAAGGTTAAGGTTGGTGGTGGGGAGAGAAATGAGGGTGGTTCGAGTAAGGAGAAGAAAGGCGGGTTTGTTTTCGGGGAGTTTGGGAGCAAGGCCGGGAAGCCAGTTGTTAATAATGGTCAAGGTCAAGAGGCAAAGTCACCTAATGTTGTTGACAATGTCATTAACTCTGATGCACTCGATAGGTTTGGTAACCGCGAAGAAAAGAAGCTTCCATTCCTTGGCAAAGATCGAAGGGATGCAAAAAGGAGACTTCCCGATGATCCAAATTATGATCCAAGAACTCTTTACTTGCCCCCTCATTTTCTGAAAAGTCTGACCGGCGGTCAGAGACAATGGTGGGAGTTCAAATCAAACCATATGGACAAGGTTCTATTTTTTAAGATGGGGAAATTTTATGAGCTTTTTGAAATGGATGCACATATTGGTGTGAAAGAACTTGATCTGCAGTATATGAAGGGTGAACAACCTCATTGTGGATTCCCAGAAAAGAACTTCTCGGTCAACCTGGAAAAACTGGCTAGAAAGGGTTATCGAGTCCTCGTAGTGGAGCAGACTGAAACCCCAGATCAACTTGAGATCCGTCGTAGAGAAGAGGGTTCAAAAGACAAGGTGGTCAAGCGGGAAATATGTGCTGTGGTAACTAAAGGAACATTGACTGAAGGGGAAATGTTGTCCGCAAATCCCAATGCTTCTTATATCGTGTCAGTAAATGAAGGTGATCCAACATTGTCAAATAATAAAGATGAGCATCTATATGGTGTTTGTGTTGTTGATGTCGCTACGAGCCATATTATTGTTGGGCAGATAAAGGATGATATCGAATGCAGCACTTTATGCTGTCTGCTGTCTGAACTACGACCAGTTGAAATTATTAAACCCATGAAGAGGCTTAGTCTTGAGACTGAGAAGGCAATCAGCAGATACACACGAAACCCTCTTGTTAATGAGTTGGTTCCAGGTTCAGAATTCTGGGATGCTGAAAGAACTATATGTGAACTCAAGACTTTTTACAGTCGCTTCAATGATTCGTCTAGATCTTCGCCTGAAGAAGCTTCGGTAGCAGTCAATGGCTCCAGTAATGAGGACAAGGGCTGTTGCCTGCCAGATGTTCTGAAGGAGCTGTTCAGTGCTGGTCCTGATGGTAGTCTTGCATTGTCAGCTCTTGGAGGCACTCTGTACTACTTGAGACAGGCTTTCCTGGATGAGACGTTGCTTAGATATGCAAAATATGAACCACTTCCCTGTTCTGGTTTCTGTGATGTTTCCAAAAAATCTTACATGGTGCTAGATGCAGCTGCTTTGGAAAACCTTGAAATATTTGAGAACAGTAGAAATGGGGATTCCTCAGGGACATTATATTCCCAACTTAACCATTGTGCCACAGCATTTGGGAAGAGGTTGCTTAAAGCATGGCTTGCAAGACCTCTGTATCACACGGAGTCTATAAAGGAACGACAGGATGCAATAGCAGGCCTTAAGGGCCCTAATTTGTCTGTTGCACTTGAATTTCGGAAAGATCTGATGAAGTTACCTGATATGGAGAGGTTGCTCACACGGCTATTTTCTAGCAGTGAAGCTCATGGAAGAAATTCAAATAAGATTGTGCTCTATGAAGATGCTTCAAAAAAACAGCTTCAAGAATTTATTTCAACTCTGCGTGGTTGTGAAGTCATGACCCTAGCTTGTGCTTCTCTTGGATCCATATTGGACAATACTGATTCAGCATTGTTACATCATCTGCTAATTCCTGGGGAAGGTCTTCCTGATGTGAATTCCATTGTAGAGCAATTTAGGGATGCCTTTGACTGGGTAGAAGCCAACAGTTCAGGTCGTATAATCCCGCATGAAGGAGTTGATGAAGAATATGACTCTGCTTGTAAGAAGATCGAGGATGTTAGTTTGAACTTGAAGAAGCACCTAAAGGAACAAAAATCAATACTTGGCGATACATCGATAACATATGTTACAGTTGGAAAGGACACTTATCTCTTACAAGTGCCTGAAAGTATGTGTCAAAGTATTCCTCAAGATTATGAGTTACGATCATCCAAGAAGGGTTTTTCCAGATATTGGACCCCATATATCAAAAAGATGTTAGGAGAGTTGACGCAGGCTGAATCTGTGAAGGAATCCAGGTTGAAAAGCATGCTGCAAAGGTTGATTGGGCGGTTTTGTGAGCATCACACAAAGTGGAGACAGTTGGTTACAACTGTTGCAGAATTAGATGTTTTGATCAGCTTGGTAATAGCAAGTGACTATTATGAAGGACCTACATGCCGGCCAATTATTTCAACTCACTCAAACCCTAATGAAGTGCCACATTTGACAGCCAAAAGCTTGGGACATCCTATCATTAGAAGTGATTCCTTAGGCAAGGGTACATTTGTTCCAAATGACATTAATATCGGTGGCACGGATCATGCCTCCTTTATCTTGCTTACTGGTCCTAACATGGGTGGAAAGTCAACTCTTCTTCGACAAATTTGCTTGGCTGTAATTCTGGCACAGGTTGGAGCGGATGTCCCTGCAGAACAGTTTCAGCTATCACTTGTTGACCGAATCTTTGTTCGTATGGGGGCAAAAGATCACATTATGGCAGGACAGAGCACATTCTTGACAGAGCTTTCAGAAACAGCTTCTATGTTGACATCTGCTACCCGTGATTCATTGGTGGCTTTGGATGAACTTGGCCGTGGCACCTCAACCTCAGATGGACAAGCCATTGCGGAATCAGTCCTTGAACATTTTGTCTGCAAAGTGCAGTGTCGGGGAATGTTCTCCACTCATTATCATCGGTTAGCAATTGACTATAAAGAAGATACCAAGGTCTCTCTATGCCATATGGCATGCCAGGTAGGAAAAGGTGATAGAGGTTTGGAAGAAGTCACATTTCTTTACAGGCTGACTCTAGGTGCATGTCCTAAAAGCTATGGTGTCAATGTTGCACGATTAGCTGGCATCCCTGACTCTGTATTGAGTAAAGCTGCTGCCAAGTCGAGAGAATTCGAGGCAAGTTATCGTAGGCAGCGTGAAATATGCAACAAGAGTTTGCCGAGTTGGGAGAAAGAGGCTTTTGGCTTCATTCAAGATCTGGTTGGTTTTGGT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_51897.p1 GENE.R_Transcript_51897~~R_Transcript_51897.p1 ORF type:internal len:1083 (+),score=271.94,MutS_V|PF00488.17|9.1e-79,MutS_I|PF01624.16|3.2e-34,MutS_III|PF05192.14|1e-31,MutS_IV|PF05190.14|4.3e-15,MutS_II|PF05188.13|5.9e-06 R_Transcript_51897:3-3248(+)
GKNAVVEDEEEDGGDCLEDMELEDEEKEKEGKKLKRKRGESAGGTVKKVKVGGGERNEGGSSKEKKGGFVFGEFGSKAGKPVVNNGQGQEAKSPNVVDNVINSDALDRFGNREEKKLPFLGKDRRDAKRRLPDDPNYDPRTLYLPPHFLKSLTGGQRQWWEFKSNHMDKVLFFKMGKFYELFEMDAHIGVKELDLQYMKGEQPHCGFPEKNFSVNLEKLARKGYRVLVVEQTETPDQLEIRRREEGSKDKVVKREICAVVTKGTLTEGEMLSANPNASYIVSVNEGDPTLSNNKDEHLYGVCVVDVATSHIIVGQIKDDIECSTLCCLLSELRPVEIIKPMKRLSLETEKAISRYTRNPLVNELVPGSEFWDAERTICELKTFYSRFNDSSRSSPEEASVAVNGSSNEDKGCCLPDVLKELFSAGPDGSLALSALGGTLYYLRQAFLDETLLRYAKYEPLPCSGFCDVSKKSYMVLDAAALENLEIFENSRNGDSSGTLYSQLNHCATAFGKRLLKAWLARPLYHTESIKERQDAIAGLKGPNLSVALEFRKDLMKLPDMERLLTRLFSSSEAHGRNSNKIVLYEDASKKQLQEFISTLRGCEVMTLACASLGSILDNTDSALLHHLLIPGEGLPDVNSIVEQFRDAFDWVEANSSGRIIPHEGVDEEYDSACKKIEDVSLNLKKHLKEQKSILGDTSITYVTVGKDTYLLQVPESMCQSIPQDYELRSSKKGFSRYWTPYIKKMLGELTQAESVKESRLKSMLQRLIGRFCEHHTKWRQLVTTVAELDVLISLVIASDYYEGPTCRPIISTHSNPNEVPHLTAKSLGHPIIRSDSLGKGTFVPNDINIGGTDHASFILLTGPNMGGKSTLLRQICLAVILAQVGADVPAEQFQLSLVDRIFVRMGAKDHIMAGQSTFLTELSETASMLTSATRDSLVALDELGRGTSTSDGQAIAESVLEHFVCKVQCRGMFSTHYHRLAIDYKEDTKVSLCHMACQVGKGDRGLEEVTFLYRLTLGACPKSYGVNVARLAGIPDSVLSKAAAKSREFEASYRRQREICNKSLPSWEKEAFGFIQDLVGFG

Click here to download the sequence:
Link to NCBI Protein BLAST