Transcript Information: R_Transcript_51938.p1


Annotated TAIR IDAT4G16180.2
Annotated Gene Nameunknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G28720.1); Has 5 Blast hits to 5 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr4:9165365-9170323 | Reverse length=820
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 131.875244622896
Replicate 223.633766724749
Replicate 331.003084505137
Condition 2: 8 Hour
Replicate 123.249509697446
Replicate 225.748059755552
Replicate 326.646206723524
Condition 3: 24 Hour
Replicate 130.252282923206
Replicate 227.025840635621
Replicate 328.464798213502


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_51938.p1 GENE.R_Transcript_51938~~R_Transcript_51938.p1 ORF type:complete len:812 (+),score=158.24 R_Transcript_51938:165-2600(+)
ATGCCATTGATGATTCCATGTCGTCGAACACAAGCAGCAACATGTATGACAGTGCTGATAATGGCGGCAGTGCTTCTTCAACCGGCAGAATCAGTTCACAAAGCCTTCAGAAGAGATCCAGGAAGCCCTCATTGGCATCACAGCGCCTTCCATGACGTCAAAGAGAGTGTCCGCTCCGATGTTCGTCGTATGCTCCACACTCGCGCTGAGGTTCCATTCCAAGTCCCTCTTGAAGTGAACATAGTCCTAGTCGGATTTAATCGTGATGGAGGCTATAGGTACACAATAGACTCCCATAAGCTGCAGGATTTTCTAAAAATCAGTTTCCCCACACACCGACCGTCATGCTTGGAGACTGGAGAGCCCCTTGATATTGAACATCATATTGTCTACAATGTTTTCCCTGCTGGACAGGCAGAACTAATATCTCTGGAGAAGGTGTTAAAAGAGGCTATGGTTCCTGCTGGAACAGCCAGAGAGACTGAATTTGGGAAGGAAGTGGCAGCATTTGACGTGGAAGCAACTGCTGTAGAGCCTGTTTTTGAGCAGCTTTATTCCTACATATTTGATGTTGATGGCGCGGGGTATCCTAATGCAGAGATTGACAGGCCGGTGCCAACTGCAATTTTTGTTTTGAACTTTGATAAGGTCAGAGTGGATCCTAGAAACAAGGAAATCAATCTTGAGGATCTTATATATGGTAATATTCCACAACTTACAGATGATGATATGAAAAAACAAGAAGGCGATTATATATATCGCTACCGTTACAATGGGGGTGGAGCATCTCAAGTTTGGCTGAGCTCAAGCAGATTTGCTGTTATTGACCTGTCAGCGGGTCCTTGCACATATGGAAAGATTGAAACAGAGGAAGGAAGCATCAGTTCCAAGACACTACCGCGCATTCGGAACCTTCTAACTGCTGCTGGTGCTGCTTTCTCAAGCCATGATGTATTTCTAGGACAACTTGGGGCACTTATTTCAATGACAATTGAGCATGTTATAGCCCCAGATGTTAGGTTTGAAACTATTGATATGACGAGAAGGTTGCTAATACCGATCATTGTTCTCCAGAACCATAATCGATACAACATTATGGCAAAAGGCCACAATTACAGTATAGATGTTGATGCGATAAAAGCAGAGGTTGTGAAAATGGTCCATCCGGACCAAGAAGTTGTAATTGTTGGGGGCGTGCATCCATTACATCACCATGAGAAGTTGGCAATCGCTGTTTCCAAAGCAATGCGAGGACATTCTGTACATGAAACAAAGAATGATGGACGTTTTCATGTTCAAACAAAGACTTATTTTGATGGTGCTATTCTTAAGGAGGAGATGGAAAGATCGGCTGATGTGCTTGCTGCTGGTATATTGGAGGTTGCTGATCCTGCTCTTTCAAATAAGTATTTCCTTCGCCAGAGCTGGATGGATGAATCGATTGGTTCAAGTGATTCCATACTGAAACATAAGCCTCTTTGGGCGTCTTATAGCAGCAAACGTGGCAAACAGAAGAAAAAGAGAACACTAAAGAAAGAAGGAGACCTTTATCGGACCTATGGAACCAGAGTCATACCAGTTTTTGTGCTTTCATTAGCTGATGTTGATCCGCACCTAATGATGGAAGATGAAAGTCTTGTTTGGACCAGTAATGATGTTGTCATTGTACTTGAGCATCAAAGTACAAAAATACCTCTAAGTTATGTTTCTGAAACAGAAAGGAGGCATGCTCTTCCATCTCAAGCTCAGCGCCATATATTGGCAGGTCTTGCATCAGCTGTTGGTGGATTGAGTGCACCATACGAAAGAGCTTCACATATACATGAACGACCACTGTTGAACTGGCTTTGGGGTGTTGGTTGCCATCCCTTTGGGCCATTTTCCAATTCTACTAAAGTCAGTCAATTGCTTCATGACGTTGCACGTAGAAATACAATATATGCTCATGTCGATTCCGCACTTCGGAAGATCAGGGACACCTCAGAGGCTGTGCAAGCTTTCGCTACAGAGTACTTGAGGACTCCTCTTGGTGAACCAGTAAAAGGAAAAAAGAACAAGTCCAGCACTGAACTTTGGTTGGAGAAGTTCTACAAAAAGACCACCCATTTGCCGGAACCATTCCCACATGAATTAGTCGAAAGATTGGAGAAGTACTTGGATAATATTGAGGAACAGCTCGTCGATTTGTCATCCTTGTTGTATGACCACCGATTACAGGAAGCACATTTTAACAGTTCAGAAATTCTGCAGACATCCATTTTCACACAGCAATATGTTGATAATATCTTGGCCAGTGAGCGCGAGAAGATGAAATGCTGCAGTATTGAGTACAAGTATCCCACACAAACATCTCAAACATTCATCTATGGAGGAATCCTTATTGCTGGATTTGTTGTATATTTCCTCGTGATTTTCTTCTCAAATCCTGTTCGTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_51938.p1 GENE.R_Transcript_51938~~R_Transcript_51938.p1 ORF type:complete len:812 (+),score=158.24 R_Transcript_51938:165-2600(+)
MPLMIPCRRTQAATCMTVLIMAAVLLQPAESVHKAFRRDPGSPHWHHSAFHDVKESVRSDVRRMLHTRAEVPFQVPLEVNIVLVGFNRDGGYRYTIDSHKLQDFLKISFPTHRPSCLETGEPLDIEHHIVYNVFPAGQAELISLEKVLKEAMVPAGTARETEFGKEVAAFDVEATAVEPVFEQLYSYIFDVDGAGYPNAEIDRPVPTAIFVLNFDKVRVDPRNKEINLEDLIYGNIPQLTDDDMKKQEGDYIYRYRYNGGGASQVWLSSSRFAVIDLSAGPCTYGKIETEEGSISSKTLPRIRNLLTAAGAAFSSHDVFLGQLGALISMTIEHVIAPDVRFETIDMTRRLLIPIIVLQNHNRYNIMAKGHNYSIDVDAIKAEVVKMVHPDQEVVIVGGVHPLHHHEKLAIAVSKAMRGHSVHETKNDGRFHVQTKTYFDGAILKEEMERSADVLAAGILEVADPALSNKYFLRQSWMDESIGSSDSILKHKPLWASYSSKRGKQKKKRTLKKEGDLYRTYGTRVIPVFVLSLADVDPHLMMEDESLVWTSNDVVIVLEHQSTKIPLSYVSETERRHALPSQAQRHILAGLASAVGGLSAPYERASHIHERPLLNWLWGVGCHPFGPFSNSTKVSQLLHDVARRNTIYAHVDSALRKIRDTSEAVQAFATEYLRTPLGEPVKGKKNKSSTELWLEKFYKKTTHLPEPFPHELVERLEKYLDNIEEQLVDLSSLLYDHRLQEAHFNSSEILQTSIFTQQYVDNILASEREKMKCCSIEYKYPTQTSQTFIYGGILIAGFVVYFLVIFFSNPVR*

Click here to download the sequence:
Link to NCBI Protein BLAST