Transcript Information: R_Transcript_52019.p1


Annotated TAIR IDAT5G51660.1
Annotated Gene Namecleavage and polyadenylation specificity factor 160
Annotated Gene Symbol(s)CPSF160, ATCPSF160
Annotation TypeOrtholog
Chromosome Positionchr5:20980250-20989268 | Forward length=1442
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 18.5691839019198
Replicate 25.0733017420865
Replicate 36.0312552698996
Condition 2: 8 Hour
Replicate 15.4502352049351
Replicate 25.81412292128
Replicate 39.2724576905194
Condition 3: 24 Hour
Replicate 110.853329746518
Replicate 28.2109860741676
Replicate 310.663609243387


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_52019.p1 GENE.R_Transcript_52019~~R_Transcript_52019.p1 ORF type:complete len:1523 (+),score=333.94,CPSF_A|PF03178.11|3.3e-85,MMS1_N|PF10433.5|5e-39,MMS1_N|PF10433.5|2.6e+02 R_Transcript_52019:219-4571(+)
ATGAGCTACGCAGCGTACAAGATGATGCACTGGCCTACGGGCATAGAGAACTGCGCTTCTGGCTATGTCACTCACAGTATTTCCGATTTTACCCCTCAAATCCCTCCTATCCAAACCGACGACCTCGATTCCGATTGGCATACCTCCAACACCAAAGGCATCGGTCCGGTCCCCAACCTCGTCGTCACTGCCGGCAATGTCCTCGAGATTTACGCGGTTCGAGTTCAAGAAGGCAATGTCGGCGGTGCAACAACTGATTCCAAGCGTGGCGGTGTCATGGCTGGCGTCTCGGGCGCTTCCTTGGAGCTTGTTTGCCACTACAGGTTGCATGGTAATATAGAATCCATGGCTGTACTCTCATCTGGTGGTGGTGACAGTTCTAGGAGAAGAGATTCCATCATCTTAGTGTTTCGGGATGCCAAAATTTCTGTGCTGGAGTATGATGATGCAAGACATTGTCTACATGCAAGTTCAATGCACTGTTTTGAGGGTCCAGATTGGCTTCATCTTAAAAGAGGGAGGGAGTCCTTTGCTAGAGGTCCGGTGGTAAAGGTGGATCCCCAAGGCAGGTGCGGCGGAGTTCTTGTTTATGATCTGCAAATGATAATACTTAAGACTGTTCAGGCTGGTACAGGTTTAGTTGGTGATGAAGAAGGTTCCAGTTTTGGAAGTGCAGCTTCTGCTCGCATTGAATCATCATACATAATTAATCTTAGGGATTTGGACGTCAAGCATGTTAAGGATTTTATATTTGTTCATGGATATATTGAGCCTGTGTTAGTAATTCTTCACGAAAGGGAGCTTACTTGGGCCGGACGAATCTCTTGGAAGCACCATACTTGCATGCTTTCAGCCCTAAGTATCAACACAACACTGAAACAGCATCCGCTTATATGGTCAGCTACGAATCTCCCACATGATGCGCACAAGCTACTTGCAGTGCCTTCTCCTATTGGTGGTGTTCTTGTAATCTGCACTAATGCGATATACTATCAAAGTCAGTCAATGTCATGCGCTTTGGCAGTGAACAGCTTTGCAGTTTCAGCTGATGGAAGCCAAGAGATGCCAAGATCGAGTTTCAGTGTGGAGCTTGATGCTGCCCATGCCACTTGGTTGGCCAATGATGTGGCCATGCTCTCATCCAAAACTGGTGAATTGCTTCTGTTGACACTTGTTTATGATGGAAGAATTGTGCAGAGGCTTGATCTCTCGAAGTCCAGAGCATCTGTTCTTACATCGGGTATGACAACAATTGGAAGCTCTTTGTTCTTCCTGGGAAGCCGCTTGGGAGATAGTTTGCTAGTGCAATATACTTCGGGAACAGTGCCTGCAATCTCATCATCTGCTTTAAAGGAAGAGGTTGGTGATATTGAAGGTGATGTACCATCTACAAAACGGCTAAGACGCTCATCTTCTGATGCTCTGCAAGATATTGTCGGTGGTGAGGAGCTTTCATTATATGGTTCAACTCCTAATAAGGCAGATTCATCCCAGAAGTCTTTCTCATTTGCAGTAAGGGACTCTCTGATAAATGTTGGTCCCTTGAAGGATTTCTCATATGGCTTAAGGGTTAATGCAAACCCTGCTGCAGCTGGAGTAGCTAAGCAAAGTAATTATGAATTGGTTTGCTGTTCTGGGCATGGGAAGAATGGTGCTCTCTGCATCCTTCAACGTTCCATTCGCCCAGAAATGATTACTGAGGTTGAACTGCCTGGGGTGAAAGGCATTTGGACTGTCTATCATAAGAGTACACGAAGTCATAATTCTGATGCATCCAAGATTGCAGCTGAGGAGGATGAATATCATGCGTATTTGATCATAAGTTTAGAGGCACGGACAATGGTTCTTGAGACTGCTGATGATCTTGCGGAAGTTACTGAAAGTGTTGACTATTATGTCCAAGGGAGTACCATAGCTGCTGGTAATCTATTTGGAAGACGACGCGTTATCCAGGTCTATGCTCATGGTGCTCGAATCCTAGATGGTTCATTTATGACACAGGAAATAAATTTGGGAGCTAGTAATCCTGAATCAGGTTCAGCATCTGAGGGTTTAACTGTCACAGCTGTGTCTATTGCTGATCCTTACGTATTGTTGAAGATGAGCGACGGTAGTATCCAGCTACTTGTTGGAGATCCAACTAGCTGCACTGTTTCCATAAACATTCCTTCAGTGTTTGAAGGTTCAAAAAAGTCAATCTGTGCATGCACACTTTATCATGATAGGGGTCCTGAGCCATGGCTTCGGAAGGCTAGTACTGATGCTTGGCTTTCTAGTGGTGTCGGGGAGGCCATTGATGGATCCGATGGGGTGCCACATGATGGGGATATCTACTGTATTGCTTGTTATGAAAGTGGCACCCTAGAAATATTGGATGTGCCTAACTTTAAAAGCGTTTTTTCTGTGGAAAATTTCATCTCTGGAAAGGCTAATCTTGTTGATGCCTTTGTGAAAGAATCTCTTGAAGACCACAAAAAAATCTCAATGATTTCAGAGGATGTGTCTGGGCAAGCCAGGAAAGAAAATGCCCAAAACATTAAGGTTACTGAGTTGGCTATGCAAAGGTGGTCTGGACAACACAGCCGTCCTTTTCTGTTTGGAATATTGACAGATGGAACAATTCTTTGTTACCATGCATATCTGTTTGAAGCTCTGGACAGTGCAAAAAATGAGGATGGAAAGGAAGGGAAAGATTTGATAACTGTTGACAGTGCAAGTTCTTCTAGGCTGCGAAATTTGAGGTTTCTCCGGATTCCCTTGGACATTCATACTCGTGAGGAAATGTCTGGGGAAGCTGCAGCCCCACGTATTTCTGTTTTCAAAAATGTTGGTGGCCATCAGGGGCTTTTCTTATCTGGAGCAAGACCTGCTTGGTTTATGGTTTTCAGGGAGCGCCTACGTGTACATCCACAGCTTTGTGATGGAGCTATTGGTGCTTTTACAGTTCTTCACAATGTGAATTGCAATCATGGGTTTATATATGTTACCTCACAGGGGTTTCTTAAAATATGCCAGCTGCCATCTGGATTGACTTACGACAATCACTGGCCCATCCAGAAGATGCCACTGAAGGGCACTCCACACCAAGTCACCTATTTTGCTGAGAAGAATTTGTACCCACTTATTGTTTCATTTCCTGTTACTAAGCCTTTAAATCAGATTCTTTCCTCACTGGTTGATCAAGAGAGTGGCCACCAAATTGATCACGAGAATCTGAGTTCTGACGAATTGCAACGCACATACACCATCGATGAATTTGAAATTCGGATCTTGGAGCCAGAAAAATCTGGTGGTCCCTGGCAAACTAAAGCTACTATTCCCATGCAGAGTTCAGAAAATGCACTGACTGTGCGAATGGTCACACTTCTGAATTCCACCACTAAGGAGAATGAAATACTTTTAGCTATTGGCACAGCTTATGTGCAAGGGGAGGATGTAGCAGCAAGAGGGCGAGTACTTCTATATGCCCTTGGGAGAGCCGATAATCCTCAAAATTTGGCTTCAGAGATATACTCCAAGGAATTAAAGGGTGCCATATCTGCTGTTGCATCACTTCAAGGTCATCTGCTCATTGCTGCTGGTCCCAAGATTATCTTGCATAAATGGACTGGTACAGAGTTGAATGGAGTGGCATTCTTTGATGCTCCACCTCTGCACGTCGTGAGCCTAAATATTGTTAAGAATTTTATTCTCCTTGGTGATGTTCACAAAAGTATATATTTTCTTAGCTGGAAGGAACAAGGTGCTCAGCTTAGCTTGTTGGCTAAGGATTTTGGATCACTTGATTGTTTTGCAACCGAGTTTTTGATTGATGGGAGTACACTTAGCCTTGTAGTATCAGATGAACAGAAAAATGTACAGATTTTCTATTATGCACCAAAATTGTCTGAGAGTTGGAAAGGACAAAAACTTCTTTCAAGAGCCGAGTTTCATGTTGGTGCCCATGTAATGAAATTCCTGCGGTTGCAAATGCTTCCAGTTTCATCTGATAGACCTAATGTTACTGAGAAAACCAATCGATATGCTTTACTATTTGGTACCCTCGATGGGAGCATTGGTTGCATTGCACCTCTTGACGAGATAACATTTCGGAGGCTGCAGTCACTGCAAAGGAAGCTTGTTGATGCTGTTCCTCATATTGCTGGACTGAATCCAAGATCTTTCCGTCAATTCCAGTCAAATGGCAGGGCACATCGGCCTGGGCCTGAGAACATAGTTGATTGCGAGCTGCTATGCCATTATGAGATGTTGCCACTGGAAGAACAACTAGAAATTGCCAACCAGATTGGAACCACTAGGTCACAAATTTTCTCAAATTTGAATGACCTTTCTGTAGGAACAAGTTTCTTGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_52019.p1 GENE.R_Transcript_52019~~R_Transcript_52019.p1 ORF type:complete len:1523 (+),score=333.94,CPSF_A|PF03178.11|3.3e-85,MMS1_N|PF10433.5|5e-39,MMS1_N|PF10433.5|2.6e+02 R_Transcript_52019:219-4571(+)
MSYAAYKMMHWPTGIENCASGYVTHSISDFTPQIPPIQTDDLDSDWHTSNTKGIGPVPNLVVTAGNVLEIYAVRVQEGNVGGATTDSKRGGVMAGVSGASLELVCHYRLHGNIESMAVLSSGGGDSSRRRDSIILVFRDAKISVLEYDDARHCLHASSMHCFEGPDWLHLKRGRESFARGPVVKVDPQGRCGGVLVYDLQMIILKTVQAGTGLVGDEEGSSFGSAASARIESSYIINLRDLDVKHVKDFIFVHGYIEPVLVILHERELTWAGRISWKHHTCMLSALSINTTLKQHPLIWSATNLPHDAHKLLAVPSPIGGVLVICTNAIYYQSQSMSCALAVNSFAVSADGSQEMPRSSFSVELDAAHATWLANDVAMLSSKTGELLLLTLVYDGRIVQRLDLSKSRASVLTSGMTTIGSSLFFLGSRLGDSLLVQYTSGTVPAISSSALKEEVGDIEGDVPSTKRLRRSSSDALQDIVGGEELSLYGSTPNKADSSQKSFSFAVRDSLINVGPLKDFSYGLRVNANPAAAGVAKQSNYELVCCSGHGKNGALCILQRSIRPEMITEVELPGVKGIWTVYHKSTRSHNSDASKIAAEEDEYHAYLIISLEARTMVLETADDLAEVTESVDYYVQGSTIAAGNLFGRRRVIQVYAHGARILDGSFMTQEINLGASNPESGSASEGLTVTAVSIADPYVLLKMSDGSIQLLVGDPTSCTVSINIPSVFEGSKKSICACTLYHDRGPEPWLRKASTDAWLSSGVGEAIDGSDGVPHDGDIYCIACYESGTLEILDVPNFKSVFSVENFISGKANLVDAFVKESLEDHKKISMISEDVSGQARKENAQNIKVTELAMQRWSGQHSRPFLFGILTDGTILCYHAYLFEALDSAKNEDGKEGKDLITVDSASSSRLRNLRFLRIPLDIHTREEMSGEAAAPRISVFKNVGGHQGLFLSGARPAWFMVFRERLRVHPQLCDGAIGAFTVLHNVNCNHGFIYVTSQGFLKICQLPSGLTYDNHWPIQKMPLKGTPHQVTYFAEKNLYPLIVSFPVTKPLNQILSSLVDQESGHQIDHENLSSDELQRTYTIDEFEIRILEPEKSGGPWQTKATIPMQSSENALTVRMVTLLNSTTKENEILLAIGTAYVQGEDVAARGRVLLYALGRADNPQNLASEIYSKELKGAISAVASLQGHLLIAAGPKIILHKWTGTELNGVAFFDAPPLHVVSLNIVKNFILLGDVHKSIYFLSWKEQGAQLSLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNVQIFYYAPKLSESWKGQKLLSRAEFHVGAHVMKFLRLQMLPVSSDRPNVTEKTNRYALLFGTLDGSIGCIAPLDEITFRRLQSLQRKLVDAVPHIAGLNPRSFRQFQSNGRAHRPGPENIVDCELLCHYEMLPLEEQLEIANQIGTTRSQIFSNLNDLSVGTSFL*

Click here to download the sequence:
Link to NCBI Protein BLAST