Transcript Information: R_Transcript_52042.p1


Annotated TAIR IDAT5G17920.1
Annotated Gene NameCobalamin-independent synthase family protein
Annotated Gene Symbol(s)ATCIMS, ATMETS, ATMS1
Annotation TypeOrtholog
Chromosome Positionchr5:5935771-5939195 | Forward length=765
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 1370.42072851319
Replicate 2258.56149063569
Replicate 3310.64646233529
Condition 2: 8 Hour
Replicate 1434.25649518058
Replicate 2495.9094787442
Replicate 3823.31535169024
Condition 3: 24 Hour
Replicate 1559.9187397232
Replicate 2489.361853922
Replicate 3527.41939048401


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_52042.p1 GENE.R_Transcript_52042~~R_Transcript_52042.p1 ORF type:complete len:766 (+),score=203.90,Meth_synt_2|PF01717.14|0.17,Meth_synt_2|PF01717.14|1.4e-157,Meth_synt_1|PF08267.8|3.7e-119,Meth_synt_1|PF08267.8|92,Meth_synt_1|PF08267.8|0.0001 R_Transcript_52042:204-2501(+)
ATGGCATCTCACATTGTTGGATACCCACGTATGGGCCCCAAGAGAGAGCTCAAGTTTGCCCTTGAGTCTTTCTGGGATGGCAAGAGCAGCGCTGAGGATTTGAAGAAGGTATCTGCTGATCTCAGGGCATCCATCTGGAAGCAGATGTCTGATGCTGGTATCAAGTACATTCCCAGCAACACCTTCTCTTACTACGACCAGGTCCTTGACACCACCGCCATGCTCGGTGCTGTCCCCCCCAGATATGGGTGGAACGGTGGTGAGATCGGATTTGACGTTTACTTCTCTATGGCCAGAGGTAATGCCTCTGTGCCTGCTATGGAAATGACCAAGTGGTTTGACACCAACTACCATTACATCGTCCCTGAGTTGGGACCAGAAGTGAACTTCTCTTACGCTTCCCACAAGGCTGTTGAGGAGTACAAGGAGGCCAAGGCGCAAGGAGTGGACACTGTCCCAGTTCTCATTGGACCAGTTTCCTACTTGTTGTTGTCCAAGCCTGCTAAGGGTGTTGAGAAATCATTCAACCTTCTCTCACTCCTTCCCAAGATCCTACCAATCTACAAGGAAGTTGTGACAGAACTCAAGGGAGCTGGTGCTTCATGGATTCAGTTTGATGAGCCTCTTTTCGTTATGGATCTTGACTCTCACAAATTGCAAGCCTTCACTGAGGCTTACACTGAACTTGAATCTACCTTGTCTGGTGTGAATGTTGTGGTTGAGACTTACATGGCTGATGTTACCGCTGAGGCATACAAGACCCTTGTCTCTTTGAAGGGTGTTGCTGGATTCGGATTTGACTTGATTCGTGGAACAAAGACCTTGGAGTTGATCAAAGCCGATTTCCCCGCTGGCAAATACCTTTTCGCTGGTGTAGTTGATGGAAGGAACATTTGGGCAAATGATCTTGCTGCTTCCCTTGCTACCCTCCAGAGTCTTGAGGGCATTGTTGGAAAGGACAAGCTTGTCGTCTCCACCTCTTGCTCACTTCTTCACACCGCTGTTGATCTCATCAACGAGACTAAGCTCGATGATGAAATCAAGTCATGGCTTGCATTTGCTGCCCAGAAGGTTGTTGAAGTAAATGCTTTGGCCAAGGCTTTGGCTGGACAGAAGGACGAGGCCTTCTTCTCTGCCAATGCTGCTGCTCTATCTTCAAGGAAGTCCTCTCCTAGAGTGACAAATGAAGCCGTTCAAAAGGCTGCTGCTGCCTTGAAGGGCTCAGACCACCGCCGTGCAACCAATGTCAGTGCTAGACTTGATGCTCAGCAGAAGAAGCTTAACCTTCCTGTCCTTCCCACCACCACCATCGGGTCTTTCCCACAGACTGTTGAGCTCAGAAGGGTCCGCCGTGAATTCAAGGCCAAGAAGATCTCTGAGGAGGAGTACGTTGCCGCCATCAAGGAAGAAATCAGCAAGGTTGTCAAGCTCCAGGAAGAACTTGACATTGATGTTCTTGTTCATGGAGAGCCTGAGAGAAACGACATGGTTGAGTACTTCGGAGAGCAGTTGTCTGGTTTTGCCTTCACCGTCAATGGTTGGGTGCAATCTTACGGATCTCGTTGTGTGAAGCCCCCAATTATCTATGGTGATGTGAGCCGCCCCAAGGCCATGACCGTTTTCTGGTCATCCATGGCTCAAAGCATGACTGCCCGCCCAATGAAGGGTATGCTTACAGGACCTGTCACCATCCTCAACTGGTCCTTTGTCAGAAATGACCAACCTAGGCATGAGACCTGCTACCAAATTGCTTTGGCCATCAAGGATGAGGTCGAGGATCTCGAGAAGGCTGGTATCAATGTCATCCAGATTGACGAGGCTGCTTTGAGAGAAGGTCTGCCCCTCAGGAAGTCTGAGCACGAATTCTACTTGAAGTGGGCCGTGCACTCCTTCCGTATCACCAATGTTGGTGTCCAAGACACTACCCAGATCCACACTCACATGTGCTACTCCCACTTCAACGACATTATCCACTCAATCATTGACATGGATGCTGATGTCATCACCATTGAGAACTCTCGTTCAGATGAGAAGCTTCTCTCAGTTTTCCGTGAGGGAGTTAAGTATGGTGCTGGAATTGGTCCTGGTGTCTACGACATCCACTCTCCTAGGATCCCACCCACCGAGGAGATCGCTGACCGTATCAGGAAGATGCTTGCAGTTTTGGAGAGCAACATCTTGTGGGTTAACCCTGACTGTGGTCTCAAGACCCGTAAGTACACCGAGGTTAACCCTGCTCTCTCCAACATGGTTGCAGCTGCCAAGCAGCTCCGCCAAGAGCTTGCCAGTGCTAAGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_52042.p1 GENE.R_Transcript_52042~~R_Transcript_52042.p1 ORF type:complete len:766 (+),score=203.90,Meth_synt_2|PF01717.14|0.17,Meth_synt_2|PF01717.14|1.4e-157,Meth_synt_1|PF08267.8|3.7e-119,Meth_synt_1|PF08267.8|92,Meth_synt_1|PF08267.8|0.0001 R_Transcript_52042:204-2501(+)
MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLKKVSADLRASIWKQMSDAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYGWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPEVNFSYASHKAVEEYKEAKAQGVDTVPVLIGPVSYLLLSKPAKGVEKSFNLLSLLPKILPIYKEVVTELKGAGASWIQFDEPLFVMDLDSHKLQAFTEAYTELESTLSGVNVVVETYMADVTAEAYKTLVSLKGVAGFGFDLIRGTKTLELIKADFPAGKYLFAGVVDGRNIWANDLAASLATLQSLEGIVGKDKLVVSTSCSLLHTAVDLINETKLDDEIKSWLAFAAQKVVEVNALAKALAGQKDEAFFSANAAALSSRKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPVLPTTTIGSFPQTVELRRVRREFKAKKISEEEYVAAIKEEISKVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSMAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHEFYLKWAVHSFRITNVGVQDTTQIHTHMCYSHFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPPTEEIADRIRKMLAVLESNILWVNPDCGLKTRKYTEVNPALSNMVAAAKQLRQELASAK*

Click here to download the sequence:
Link to NCBI Protein BLAST