Transcript Information: R_Transcript_52087.p1


Annotated TAIR IDAT3G08020.1
Annotated Gene NamePHD finger family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:2557753-2561534 | Reverse length=779
E-Value2E-273
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.9113487760112
Replicate 21.9910284877524
Replicate 32.5107138498246
Condition 2: 8 Hour
Replicate 12.2013154447647
Replicate 23.4973300416633
Replicate 33.8672766469544
Condition 3: 24 Hour
Replicate 14.4954326960652
Replicate 23.0964279723224
Replicate 32.8572619418856


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_52087.p1 GENE.R_Transcript_52087~~R_Transcript_52087.p1 ORF type:complete len:812 (+),score=172.46,PHD|PF00628.25|0.00017,PHD|PF00628.25|0.00034,PHD|PF00628.25|1.3e+04,PHD|PF00628.25|9.5e-07 R_Transcript_52087:189-2624(+)
ATGGCATTTCATGTCGCTTGCCCAATTACCTGCAAGCGAATCTGCTACTGTTCGTTAGGGTTTGGGCCCGCACTCCAGACCTCAAGAGGAAAGTCCGATTTTCTCAATGGAATCGATTTAATCGACAAATTTTTGAGCGATCCATGGTTAATTAGGGTTAAGGAAGGTACTACGGTTCAAGTCGCTGTCCCTAAACTCGCCCCGCCGCCTCCTCCGCCTCCTCCTGTCTCTGCCGCCGATGAGGAAGCCGCTGCCGCTGTCGCCGCTGCTGAGGAGCTCTTGTCGGCTCAGACTAAGCGCGCCGCCTTGCAGAAGAAGGCTGCTGTTGCTTCTATGGCTGCTGAGGACTTTGCCAGGCGCTTTGAGTCCGGCGCTCTGGTGGATGTCCCCAAAGATTCTACAGGAGAGGACCAGTGTCAGAGCAATGTAAATGTGATGTGTCGATTATGCTTCTCTGGTGAGAATGAAGGAAGTGAAAGGGCAAGAAGGATGCTTCCATGCAGAAGTTGTGGAAAGAAATATCACAGAAGTTGCTTGAAAACATGGTCTCAGCACAGAGATTTGTTTCACTGGAGTTCATGGACATGCCCCTCCTGTCGTGTATGCGAGGTTTGTCGTAGGGCTGGAGAACCAAATAAGTTTAAATTCTGCAAGAGATGTGATGGAGCAATTCATTGCTACTGTATGCAACCTCCACACAAGAATGTTAGTTCTGGACCTTTTTTGTGCTCCAAGCATACAAAATGCCACAGCTGTGGGTCAAATGTTCCAGGCAATGGGATGAGTTTAAGGTGGTTTTTAGGGTATACATGTTGTGATGCTTGTGGGAGGTTGTTCACTAAAGGCAACTACTGTCCTGTTTGCTTGAAGGTCTATAGAGATTCAGAGTCAACACCTATGGTTTGCTGTGATATTTGCCAACGCTGGGTGCACTGCCAGTGTGACGGGATCAGTGACGAAAGATATTTGCAGTTTCAAATTGATGGAAATCTTCCATACACATGCCCGACATGCCGAGGCGAGTGCTACCAGGTTAGGGATCTTGAAGATGCTGTACAAGAGCTGTGGAGGAGAAGAGATGAAGCTGATCGAGACTTGATAGCAAGTTTGAGGGCGGCTGCTGGTTTGCCAACTGATGAAGAATATTTTTCAATTTCGCTGTTCTCTGATGATGAAGACAATGGTCCAAGTGCAATTAGGAGTGAGCTTGGGCGTGCAAAATACTCGTTCAAAAGTGTAGCAGACTTTTCCCCGAAAAAGACCAAGGAATCAAATAAAAAATCTTCGAGCAAAAAACAAGTGAAGAAAAAGGGTTTCCAGTTGCCTGTGAATGATGCAATCGAGGTTAATTCTGATGAGCAGCATGATGTAGATGACTTGCTCTCGCAAGCACCAGATTCCTTTTCTACTCCTGTCACTGGAAGCTTGAGCCCGGCTGTCAGAATATGCTCCATGAATGAACAAGGGGGTTTGAAGGACAAACTTGTTGATGAGGCCACAGGGAACAGTGAGGACAGAAAACCAACAATTTTACAGCTTAAAAGCAAGAAGGTCAATGACAATGGCACAAGCGAGGATGTGGGCAAAGGTGCTAGCAAACCAAAGATTATGAAGGGAACCAAGTTAGTCATACACTTGGGTGGACGGAATAAAACCATGACCAATTCTCCAAGGTCCGATTCTTCAAGCTATCAGAGGGAACAAGAGTTGTTGACACAAAGTGGTAGTGAAGCAGTGAGTCAACAAAGAATGGTTGATTACATAGCAGACAAATCTGATGGCACAGCCACCTCTGATGATGGTAACAAAGTAGACAGCCCCCAGGAAATAAAAGGGCTGAATCCAAGGGAGCGTAACATAATAAAGCTTGGTACAGTAGGGCTTCAAAACAATGTATCGAAGAGTGAGAAGGTGTCTTTGAGAAAGCATCCAGAGAACAGGTTCGACATATCTATTGATGGTAATAAAAGTAAAAAGCAAGAGCCTCTGCAATCAGATCCTTTGACAAAGGATTCCAGGCCCTTGCTAAGACTCAAATTCAAGACCCCTTATCCAGGATCCTGGCCTGTGCAAGGTGAGGAAGAAAGGGGATCCATCAAAGGTCAACGGTCCAAGAGAAAGAGACCTTCCCCCTTGGTAGAAAAGCCTACACAACAGGAAAGGGAAGATGTGAAGGAGTCGCAAGATGACAGTTTAATGAATGAGATTATGGATGCCAATTGGGTTTTGAAAAAGTTGGGCAGAGATGCTATAGGGAAGAGAGTAGAAGTTCATCAGTCGTCTGATAATTCTTGGCATAAAGGAGTTGTTGGTGATGTCATTGAGGGGACATCGCGATTGTCTATTGATCTCGATGACGGAAGAACCAAGATGTTGGAACTTGGAAAGCAAGGCATTCGATTTGTTCCACAGAAGGATAAGAGACTAAAATCTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_52087.p1 GENE.R_Transcript_52087~~R_Transcript_52087.p1 ORF type:complete len:812 (+),score=172.46,PHD|PF00628.25|0.00017,PHD|PF00628.25|0.00034,PHD|PF00628.25|1.3e+04,PHD|PF00628.25|9.5e-07 R_Transcript_52087:189-2624(+)
MAFHVACPITCKRICYCSLGFGPALQTSRGKSDFLNGIDLIDKFLSDPWLIRVKEGTTVQVAVPKLAPPPPPPPPVSAADEEAAAAVAAAEELLSAQTKRAALQKKAAVASMAAEDFARRFESGALVDVPKDSTGEDQCQSNVNVMCRLCFSGENEGSERARRMLPCRSCGKKYHRSCLKTWSQHRDLFHWSSWTCPSCRVCEVCRRAGEPNKFKFCKRCDGAIHCYCMQPPHKNVSSGPFLCSKHTKCHSCGSNVPGNGMSLRWFLGYTCCDACGRLFTKGNYCPVCLKVYRDSESTPMVCCDICQRWVHCQCDGISDERYLQFQIDGNLPYTCPTCRGECYQVRDLEDAVQELWRRRDEADRDLIASLRAAAGLPTDEEYFSISLFSDDEDNGPSAIRSELGRAKYSFKSVADFSPKKTKESNKKSSSKKQVKKKGFQLPVNDAIEVNSDEQHDVDDLLSQAPDSFSTPVTGSLSPAVRICSMNEQGGLKDKLVDEATGNSEDRKPTILQLKSKKVNDNGTSEDVGKGASKPKIMKGTKLVIHLGGRNKTMTNSPRSDSSSYQREQELLTQSGSEAVSQQRMVDYIADKSDGTATSDDGNKVDSPQEIKGLNPRERNIIKLGTVGLQNNVSKSEKVSLRKHPENRFDISIDGNKSKKQEPLQSDPLTKDSRPLLRLKFKTPYPGSWPVQGEEERGSIKGQRSKRKRPSPLVEKPTQQEREDVKESQDDSLMNEIMDANWVLKKLGRDAIGKRVEVHQSSDNSWHKGVVGDVIEGTSRLSIDLDDGRTKMLELGKQGIRFVPQKDKRLKS*

Click here to download the sequence:
Link to NCBI Protein BLAST