Transcript Information: R_Transcript_52161.p1


Annotated TAIR IDAT5G22450.1
Annotated Gene Nameunknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G19390.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:7437145-7442856 | Reverse length=1154
E-Value2.2E-221
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 118.637072085921
Replicate 211.222770003661
Replicate 314.827677787408
Condition 2: 8 Hour
Replicate 113.067372370836
Replicate 216.224814938638
Replicate 319.251708233744
Condition 3: 24 Hour
Replicate 117.62417524551
Replicate 212.290051671349
Replicate 317.152738268941


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_52161.p1 GENE.R_Transcript_52161~~R_Transcript_52161.p1 ORF type:complete len:1188 (+),score=304.62 R_Transcript_52161:515-4078(+)
ATGGGTGCTGATGGGGGATCAGGTCCTGTGAGCCGGGGTGGTGTCGTGTCATCATCAGATATGATACCCCCATTACCCCAATGTCTACCTTTGGAGCCAATCTCATTAGGCAGCCAAAAATTTACACGTTCTGGAGAATTGAGGAGAGCTCTGGGCGTTCCTTTAGGAGGTGCTTCTGAAGACCATCCTTTCAGAGTTTCTAGTTATAAGCCTTCACCACCTGTAGCAACTGAAGAGCTAAAGCAATTCAAAGACAATGTTCTAGATGCCTCTATGAAAGCCAAGGAAAGGTCGAAGATGTTCTGCGAATCAATCTTTAAAATAGATAAGATTAGGGAAGCCATGGGATCAAAGAAGAGGCAACGTACTGAACTCTTGTCACATGAAAAGCCAAATGGATCAAGCTTGTTGAAGAGCTCAGGTCAGCCTCCTCGTAATCTCATTGATCAGTCAGCTCAAAGATTGGAGGACAAGGCCAACTGTGCTGGCTTGAATAAGCGTTTTCGCTCATCTGCTGTGGATCTAAGGGTCGACAGTAGAGCCAGTTCTTTGTCAAAGGATCAAATGAACAATGAAAAGGATACAAACGTTGCTAAACCTGTAACTGGACCTTCTGTTCAGCCTGAAGAAAGAATCCGCCGGCTCTCTGCTGTTGGTGAGGGTTGGGATAAAAAAATGAAGCGGAAACGTTCAGTTGGGACAGTAGCAAATAGATCCACTGACACTGATGTAAAAAGAGCAGTGCATTCAAAGCTGAATACTGATTCAAAGTTGGTGTCCTGTGATGCCTCCACTTCAAGGCCAAATACTAACCAAGCCATCTCAACTGGCAGTCCCAGTACAGTTATAAAAGGGAAGATTTCTAGGGCACCCCGAACTGGTGCAGTTGTGCCAGTGAACTCCTCTTCAGATGTTCAAGCTTCATCAGAAGCTTGTGAAGGGTGGGAGCAGCCTGCAAGCTCTAACAAAGTGATTTCACTTGGTCTGATGCAGAACCATCATCGTGCTACAAATTCATCTCATACATTTGGGCAATGGGTTGGTCAGAGACAACAAAAAAGTTCACGTAGCAGAAGAACAAATCTGGTATCCCCTGTCTCTAACCACGATGAGGGTCAAACCTCGTCATTAAATTTTGCACCTCCTGGTAATAGTGCTCGAAGCTCTTTGAATGGGACCTCTGGATGTTTGGATACTGTTGAAGCGCATAATAATGCCCCAAAAAGTAAAATAAAAGTTGAGAGTGCACCATCTCCTATCCGATTATCAGAAGGTGACGACACAAGGGGCTTGGAACACAAACTGGAAGAAAAAGGAACAGGTTGCAGTGATGGTCCATCAAACGGAAAGGGTAAAGTTAGGGCTTTTCTATTTCCTACAAAGAGGAATAAAAATGTGGCGAATGATAATGTTGTGGACGGTGTCCGGAAGCAAGGGAGGACAATGAGAGGATTATCCTTGTCACGGTCGGGAGTCTCACAGTGTGAGGTAAAGTCAGAGAACGTGTCAGCAATGAAGCCAGTCCAGAATACGAGAGCAGGGTCTGAAAAGATTAGAAGTAAATCAGGACGACCACCTTCCAAAAGGATGTTAGATGGGAGGACTTTATCCCGCACTTCTGAATCTGATGACGATCATGAAGAGTTGTTGGCAGCTGCTGCTTCTGCTCGCAAGGCTAACTCACTTTCTTGTTCTGGACGTTTCTGGAAGAAAGTGGAACCTATATTTGGTCCTGTAAGCTCACATGATACAAGTTATTTGAAGCAACAGTTGAGTTATGCACAGGCATTAGAGGACAATTTATCTCAGATTACGGGCTCTGGATTCGACCTCTTGGGTATTTTCATGCACAAGGAAAGAGCTGATGTTTCTTTTGGGAAGCAAGGAAGCCATTCCTATCAAGTAGTGGATAAGGATGAAGGATTAGCTGGGGAAAGGAGGTTGGACAAGTTTTCTTCCTTGTACCAAAGAATTCTTTCTGCTTTGATTGAAGAAGATGAATGTGAAGGAATTTACAATGGAAATGAAGCAGTAACTATGTCTTTTCAATGTGCAAGTGATGATTCTCATTGTGGCTCGTGTAATTATGCCGACGCTGAAACTAGGGAGAGAGATAGACTTGAGTCTGAGGCTGAGTCAATGGTCGATTTTCAGATTCAGAAACGTTCTTCTGGGGATAGATTTTCTTGTAATAAGAGTGTTACATCTAATACAACTAGGAATGTGAGTATGTCTGATTCTTTGTATAGCAGTGGAAGGTGGTTAGGGGATGATTGCCTGTCTCATTCAGATGTGGAGTTTGTCAGTGGAAGTTATCATAATGATCAGGTGGGAGTACAACCTGCAGATCTAACAGTCCCCGGAACTTTTTCTGATTGCCAATATCAGCTGATGTGTGTTGATGACAGGCTGATATTGGAGCTTCAGAGTTTCGGATTATACCTTGATACAATGCCTGATCTGGCTGATGGAGATGAAGTGATTGTTCGAGATATCATGGAGCTTAAGGACGGACTCTGCGAACAGATTGGGAAGAAGAAGCATAACTTGGTGAAGCTTGACAAGGCTATTGAAGAAGATAAAGAGAGAGATAAATGGTCTTTAGAGCTCGTTGCCATGGAACAACTGATTCAAATGGCCTATAAAAGGCGGATGGCTTGCCGAAGAAACAATGCTTCAAAAGCTGTTATGCGCAAAGTTTCGAAGCAAGTTGCAATGGGTTTCATAGAACGGACTCTTGCCAGGTGTAAGAATTTTGAACTCACGGGACGGAGCTGCTTCAATGAGCCTGCTCTGCAGAATGTTCTATTTGCAGCACCTCAAGGCAATGATGCAGGTAGCGACGTAGCAACTGATGTTAATGCTTGCCTTGGAGCTCCTAAGCATCAAAATGATGCTGCAAAAGCTGATTCAATCTCTCTTAGCATACTGGATTCTTGCATTGATGACGTTGGGAGAGGCTCCATCGAATCTCCACTAACTGCCAGCCATTCTTCTGAGCATGGTTTCATTAAGCATGAAGCAACATTACAAAAGGGAAAGAAGAAGGAGCTACTGCTTGATGATGTTGGTGGTGCTTCCTCCAGGGCTACTACAGCGTTTGGCAGCTCCCTTGCTAGAGGAGCGAAAGGGAAGAGAAGTGAAAGAGATAGAGATCATAATAGAGGTACTCTGATGGCTAATTCTGCCAGTGAGAGCCAGTCAGTTAGATTTAGGACTGAGCAGAAACAAAAATTAAAACCCCAGCAGAGTTCAGCCTCTGCTATGCAGCCTTTATCAAATTCCATCCAGCAGCAACAAAATACTGGAAGCAATAGGAAAAGCAGGGAAATGGAATTGTCATCTTCAGGAAATGCTTTGACAGATGATTGTGATGAATTAGAGGATCCTATTGATTTTTCAAGCCTCCCAATGCCTGATTTTGATTCCATAGAGCAACTGGGTGTTACTAATGATCCAAATGCAACTCAAGATTTTAATTTTTGGTTTGATGGCTTACAAGAGGATGGTTCTGAAGGTCTTCTTATACCAATGGATGACCTGAGTATGATTCCTCCTATCTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_52161.p1 GENE.R_Transcript_52161~~R_Transcript_52161.p1 ORF type:complete len:1188 (+),score=304.62 R_Transcript_52161:515-4078(+)
MGADGGSGPVSRGGVVSSSDMIPPLPQCLPLEPISLGSQKFTRSGELRRALGVPLGGASEDHPFRVSSYKPSPPVATEELKQFKDNVLDASMKAKERSKMFCESIFKIDKIREAMGSKKRQRTELLSHEKPNGSSLLKSSGQPPRNLIDQSAQRLEDKANCAGLNKRFRSSAVDLRVDSRASSLSKDQMNNEKDTNVAKPVTGPSVQPEERIRRLSAVGEGWDKKMKRKRSVGTVANRSTDTDVKRAVHSKLNTDSKLVSCDASTSRPNTNQAISTGSPSTVIKGKISRAPRTGAVVPVNSSSDVQASSEACEGWEQPASSNKVISLGLMQNHHRATNSSHTFGQWVGQRQQKSSRSRRTNLVSPVSNHDEGQTSSLNFAPPGNSARSSLNGTSGCLDTVEAHNNAPKSKIKVESAPSPIRLSEGDDTRGLEHKLEEKGTGCSDGPSNGKGKVRAFLFPTKRNKNVANDNVVDGVRKQGRTMRGLSLSRSGVSQCEVKSENVSAMKPVQNTRAGSEKIRSKSGRPPSKRMLDGRTLSRTSESDDDHEELLAAAASARKANSLSCSGRFWKKVEPIFGPVSSHDTSYLKQQLSYAQALEDNLSQITGSGFDLLGIFMHKERADVSFGKQGSHSYQVVDKDEGLAGERRLDKFSSLYQRILSALIEEDECEGIYNGNEAVTMSFQCASDDSHCGSCNYADAETRERDRLESEAESMVDFQIQKRSSGDRFSCNKSVTSNTTRNVSMSDSLYSSGRWLGDDCLSHSDVEFVSGSYHNDQVGVQPADLTVPGTFSDCQYQLMCVDDRLILELQSFGLYLDTMPDLADGDEVIVRDIMELKDGLCEQIGKKKHNLVKLDKAIEEDKERDKWSLELVAMEQLIQMAYKRRMACRRNNASKAVMRKVSKQVAMGFIERTLARCKNFELTGRSCFNEPALQNVLFAAPQGNDAGSDVATDVNACLGAPKHQNDAAKADSISLSILDSCIDDVGRGSIESPLTASHSSEHGFIKHEATLQKGKKKELLLDDVGGASSRATTAFGSSLARGAKGKRSERDRDHNRGTLMANSASESQSVRFRTEQKQKLKPQQSSASAMQPLSNSIQQQQNTGSNRKSREMELSSSGNALTDDCDELEDPIDFSSLPMPDFDSIEQLGVTNDPNATQDFNFWFDGLQEDGSEGLLIPMDDLSMIPPI*

Click here to download the sequence:
Link to NCBI Protein BLAST