Transcript Information: R_Transcript_52196.p1


Annotated TAIR IDAT5G54470.1
Annotated Gene NameB-box type zinc finger family protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:22114584-22115315 | Reverse length=215
E-Value8E-25
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 164.217235358874
Replicate 249.72305689496
Replicate 351.956645729455
Condition 2: 8 Hour
Replicate 119.811290730044
Replicate 229.272427137552
Replicate 329.785142881635
Condition 3: 24 Hour
Replicate 137.776028256495
Replicate 236.992684230105
Replicate 340.293274537243


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_52196.p1 GENE.R_Transcript_52196~~R_Transcript_52196.p1 ORF type:3prime_partial len:220 (+),score=22.41,zf-B_box|PF00643.20|3e-06,zf-B_box|PF00643.20|8.5e+02,zf-B_box|PF00643.20|1.7e+03 R_Transcript_52196:86-742(+)
ATGAACCCAATACATCCCCCTCCTAAATTCCACACATTTCACTCCTCTATACCACACACAAAAACCTCCTCTCATAAGAACAATACCTTCTTCACAACTACTACTATTACTATATATCTCCCTTATTTTTCCTCATATCCACATCCTTATCTCATCTCCAACCCAATCAACAACTTCACTTGTACATTGAAATTCAAGCTACCTAATCAAACCATGAAGAAGGTTGGTGCTATAGGGTGCGAGCTCTGCGGCTCACCAGCCAACACATACTGCGAATCGGACCAAGCACGGCTGTGTTGGAACTGCGATGACAAGGTTCACGGCGCCAACTTCCTGGTGGCTAAGCACACTCGAACCCTCCTTTGTCACCTTTGCCAATCTCCAACCTCATGGTCCGCTTCTGGTCCCAAACTCACCCCTTCCATGTCCTTTTGCCTCTCTTGCCTGAACCGCAACAAAACTAGCTCAAGTTTATCTACAACATCACTTCAAGATGGTCATGTTTCCTACGAAGACCATGACCACCATCTAGATGATGGGCCTGACGATATTGATACTGATCACGATATTGATGATTCAATTGAAAGCGATGATGATGGAGAAGAAGAAGAAGATGATGATTATAGAAGTTATAGCGAAGATGATGACGACGACGAC

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_52196.p1 GENE.R_Transcript_52196~~R_Transcript_52196.p1 ORF type:3prime_partial len:220 (+),score=22.41,zf-B_box|PF00643.20|3e-06,zf-B_box|PF00643.20|8.5e+02,zf-B_box|PF00643.20|1.7e+03 R_Transcript_52196:86-742(+)
MNPIHPPPKFHTFHSSIPHTKTSSHKNNTFFTTTTITIYLPYFSSYPHPYLISNPINNFTCTLKFKLPNQTMKKVGAIGCELCGSPANTYCESDQARLCWNCDDKVHGANFLVAKHTRTLLCHLCQSPTSWSASGPKLTPSMSFCLSCLNRNKTSSSLSTTSLQDGHVSYEDHDHHLDDGPDDIDTDHDIDDSIESDDDGEEEEDDDYRSYSEDDDDDD

Click here to download the sequence:
Link to NCBI Protein BLAST