Transcript Information: R_Transcript_52366.p1


Annotated TAIR IDAT4G29090.1
Annotated Gene NameRibonuclease H-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr4:14333528-14335255 | Forward length=575
E-Value1E-31
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 15.8930545138429
Replicate 23.9602197896501
Replicate 35.7607428449117
Condition 2: 8 Hour
Replicate 14.3687609506555
Replicate 24.5975644907111
Replicate 34.5494691019662
Condition 3: 24 Hour
Replicate 15.4419950862612
Replicate 23.8788773070089
Replicate 35.002372608985


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_52366.p1 GENE.R_Transcript_52366~~R_Transcript_52366.p1 ORF type:complete len:1177 (+),score=133.04,RVT_1|PF00078.23|2.2e+02,RVT_1|PF00078.23|2.7e-42,zf-RVT|PF13966.2|3.1e-16,RVT_3|PF13456.2|7.5e+03,RVT_3|PF13456.2|7.3e-14 R_Transcript_52366:2742-6272(+)
ATGGAAAGGCTTGATAGAGCGCTTATTAATGCAGATTGGTTAACCCAATACCCTGAATCCCATCTATTACATCTTCCCCGTCTTACCTCCGACCATTGCCCCATATTGCTTAAAACCACCACCTTGCTAGCCAAACACTACACCAAACCCTTTCGTCTTGAGCCGTGGTGGACAATGGATGTCGATTTCCCTAATCTCCTACAAAACCTTTGGGACCACAGTAAGGATACTAGGGAGAACTTAGCTAAGATTGTCAGTCCCATCACTACCTGGGCAAAACAGAAGTTTGGTAACTTAGGCCAAAGGAAAAAGAGATTATTCTCTCGGCTTCATGGGGTGCAAAAAGAACTGTGTGAGAACCCTTATAACACCTACCTGCGAGACCTAGAGAAACTTCTCACCAGCGAGCTAGAGGAAATCCTCAACAATGAGGAGTCCTTTTGGCAAGTGCGCTCTAGGAATAATTGGATCACCCAAGGTGATCGCAATACCTCGTACTTCCACAGAACAGTCCTCTTTAGAAGGAAATGCAATAAGATTTGGTCTTTAAGGAATTCGGTAGGGGAGGACATCAAGGACCCCCAATTGCTTAACCAACACATTAGAGACCACTTTATGACCCTCCTCTCCACTGAAAAAACCCTTTCTTGGTTTCTCCCCCAGTGGTTATTCCCTGTTTCCTCTGATTCTATTAGCATTGGTCAGCCCCCTACCCTTGAGGAAGTTAGGGATGGTGTGTTTAACCAGGGGAGCTGTAAAGCTCCAGGCCCCGATGGGTTCCACGCCATCTTTTATCAAAGATTCTGGAACTTGGTGGGCAAGGACCTTACAAAGTCCATCACCTCCATCTTCTCCTCCCTTGTCTTTCCTCCGGGTTTCAACCAAACCCTCATTAGCCTCATCCCAAAGTGCCCAAACCCTGAAACGGTTAAGCAACTGAGACCTATTAGCTTGTGCAATACAAACTATAAGGTTATCTCTAAGATCCTAGTCAATAGGATTAGACCTTTCTTGGGTGATCTCATCTCCCCTAACCAAAATAGCTTCATTCCTGGGAGGGGGTCGGACATTAACTACATTGTTGCCTCTGAGATTCTGCACTCTATGGGCAAGAAAAAAGGAAAAAGGGGGTGGTTTGCTTTGAAAATTGACCTTGAGAAAGCCTATGACAGGATGGAATGGGATTTCATCCGGAATATGCTATTCTCTTTCAACTTTGACTCCACCTCTATTAGACTCATCATGGAATGCATCACAACTGTGTCCACCTCAGTCTTGGTCAACGGGGGTTTAACCGAAGAATTCATACCCACTAGGGGTCTTAGACAAGGAGATCCTCTTTCACCCTATATCTTCATCCTCTGTATGGAGTTCTTCTCCAAGCTCATCCATAATGCCTGTGAGGAGGGAACCTGGACCCCTTTTGCATTCTCAGGCTCAGGCCTTTCCATATCCCACTTACTCTTTGCTGACGATGTGATTTTGTTTGGGGAGGCCAACCCCCTGACTTTAGAGTCCCTGGACTCAACCCTCCATCTTTTTTGCCAAGCGTCGGGTCAAAAAATCAATGCTAATAAGAGTACTCTCTTCTTTTCTCCTAACACTGACGCGAGCACAATCAAGCTCTTTGAGGATACCCTTGGAACTAAGCCTGCCCCAGACCTCGGTACTTACCTAGGACTCCCCCTTACCACTAGAAGGCCTACCAAAAACCAGCTGTGTGGCATTGTACAAAAGGTGAGGGAGAAGCTTGCCTCTTGGAAGACTAAATTCCTTACTAGAGCTGGTAGGGTTTGCCTTATTAATGCAACTCTCAACGCCATTCCTAATTACTACATGCATGGTGTCTCTTTCCCCAAGAGTCTCTCCAAAGAAATGAATAGGACCATTAACAATTTTCTTTGGGGGGATTCAACGGAGCGGAGGAAACTACATCTAATAGGTTGGGAAAGGGTTACAAGAACCAAGAATCATGGGGGGCTAGGGATTAGAGACCTGGGTATCCTCAATAGAGCCCTTATGGCTAAGTTGGGTTGGAAAACCCTTCTCTCTAGTGATAACCTAGCTGGGCATGTCCTTAAAGAGAAGTATATCCACAATAGGACCCAGGTTGTCCCTTTTAGGCTGGGCTCCCATGTTTGGCAGGACATTGGGAAGGGGTGGGATATTCTTGATGAGCATACTGTTTGGTCCATTGGTAATGGTGAGCGAACCTTGTTTAGGCTTGACCACTGGCTTCTAGGGGGAACCCTGCGGAGTCGAATTGAGGGACCCTTTACCTATGTGGAGTCTAACTTGAGAGTGAATGAGTGCATCCGCAATGGCCATTGGTATCTGGATGGGCTGTCCTTTGCTCTCCCGGAGGACCTCCGTACTCGTATCCTCCTCTTTCCTATTCCCTGTGGTTCATATTCTGACTTCCCAACTATCTCCCTTCTTCGGGATGGGAAGTTTGATTTGACCACCACTTATGAGTTTCTTAGGAACAACTCTAAGCCTGGGGAACCCCAAAATCTTGATTGGATTTGGAAGTGTTGCACTCTCCCCAAAATCCAATTCTTTCTTTGGCTCTCCTACTTAGATCGCCTACCTCATAAGACCACTCTGGCCATAAGGAACATTATACCTTCTGACTCTTGTCCGGTTTGTAATGAGAGAGAAGACACTATCCACGTCCTTAGGAATTGTAGGGCGGCTAGGGAAATTTGGACTAAGTTTGAGACCACCATGGACTTCTTCTCCCTTGACAGGGAAGATTGGCTCAAGAACAACCTCACTTCTAAGAATGTTGTCTCTCACATCCCTTGGAATATCCTTTTCTCATTCCTTGTTTGGGGTATTTGGAAGAGGCGCAACCTTGGCATTTTCAATCCCAATCCCATGCCCATTCATGTGTGGACCCAGCATATTTTATTCCAAGCTACAGAATTTTTCACATCCTCCCCTAATACCCAAAAATCCAAACTGCCAACCAACAATCGCCTTTGGGAACCACCTCCACCGGGTGTCGTCAAGCTCAACTTAGACGCCAGTTTTGTCTTTGGTTATTGCGCAGGTATTGCAGGTGTGGCAAGGGATAGCCACGGGAATTGGTTATGGGGTTTTCAAGCCAAAACTTCATGCCACAGCCCTTTAATGGCGGAACTTCAAGCACTAAGGGAAGCACTACTTCAATGTTCCAAGAGAAACCTCCCTCATGTGCTGATTGCATCAGATTGTGCCCAAGCTATTAAGCTCCTCTCTCAACCAGTTGCACCGAGGTCAATAGTTACTAATCTAGTTTTGGAATGTAGGGAACTGAGAAGTGGTACCACTATGACCCAACTGATTAAGGAAGCAAGGGAAAATAACAAGGTAGCGGATTGCTTGGCAAGAGAAGCACGAGGATTCAACCACGGTGAAGTACAAGTGCTGCACTCTACTCCCGCCGTTTGCGAACGCCTGCTCTATGAAGATTATGTTAACATGTCTAATATTTTGTCTAATGGACAACCTCCTAGAGCTAGTGTTGTAATCTCTGAATATGGCTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_52366.p1 GENE.R_Transcript_52366~~R_Transcript_52366.p1 ORF type:complete len:1177 (+),score=133.04,RVT_1|PF00078.23|2.2e+02,RVT_1|PF00078.23|2.7e-42,zf-RVT|PF13966.2|3.1e-16,RVT_3|PF13456.2|7.5e+03,RVT_3|PF13456.2|7.3e-14 R_Transcript_52366:2742-6272(+)
MERLDRALINADWLTQYPESHLLHLPRLTSDHCPILLKTTTLLAKHYTKPFRLEPWWTMDVDFPNLLQNLWDHSKDTRENLAKIVSPITTWAKQKFGNLGQRKKRLFSRLHGVQKELCENPYNTYLRDLEKLLTSELEEILNNEESFWQVRSRNNWITQGDRNTSYFHRTVLFRRKCNKIWSLRNSVGEDIKDPQLLNQHIRDHFMTLLSTEKTLSWFLPQWLFPVSSDSISIGQPPTLEEVRDGVFNQGSCKAPGPDGFHAIFYQRFWNLVGKDLTKSITSIFSSLVFPPGFNQTLISLIPKCPNPETVKQLRPISLCNTNYKVISKILVNRIRPFLGDLISPNQNSFIPGRGSDINYIVASEILHSMGKKKGKRGWFALKIDLEKAYDRMEWDFIRNMLFSFNFDSTSIRLIMECITTVSTSVLVNGGLTEEFIPTRGLRQGDPLSPYIFILCMEFFSKLIHNACEEGTWTPFAFSGSGLSISHLLFADDVILFGEANPLTLESLDSTLHLFCQASGQKINANKSTLFFSPNTDASTIKLFEDTLGTKPAPDLGTYLGLPLTTRRPTKNQLCGIVQKVREKLASWKTKFLTRAGRVCLINATLNAIPNYYMHGVSFPKSLSKEMNRTINNFLWGDSTERRKLHLIGWERVTRTKNHGGLGIRDLGILNRALMAKLGWKTLLSSDNLAGHVLKEKYIHNRTQVVPFRLGSHVWQDIGKGWDILDEHTVWSIGNGERTLFRLDHWLLGGTLRSRIEGPFTYVESNLRVNECIRNGHWYLDGLSFALPEDLRTRILLFPIPCGSYSDFPTISLLRDGKFDLTTTYEFLRNNSKPGEPQNLDWIWKCCTLPKIQFFLWLSYLDRLPHKTTLAIRNIIPSDSCPVCNEREDTIHVLRNCRAAREIWTKFETTMDFFSLDREDWLKNNLTSKNVVSHIPWNILFSFLVWGIWKRRNLGIFNPNPMPIHVWTQHILFQATEFFTSSPNTQKSKLPTNNRLWEPPPPGVVKLNLDASFVFGYCAGIAGVARDSHGNWLWGFQAKTSCHSPLMAELQALREALLQCSKRNLPHVLIASDCAQAIKLLSQPVAPRSIVTNLVLECRELRSGTTMTQLIKEARENNKVADCLAREARGFNHGEVQVLHSTPAVCERLLYEDYVNMSNILSNGQPPRASVVISEYG*

Click here to download the sequence:
Link to NCBI Protein BLAST