Transcript Information: R_Transcript_52372.p1


Annotated TAIR IDAT3G24255.1
Annotated Gene NameRNA-directed DNA polymerase (reverse transcriptase)-related family protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:8789471-8793208 | Forward length=746
E-Value2E-22
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 15.6769468196101
Replicate 22.8569480048095
Replicate 34.8237730359068
Condition 2: 8 Hour
Replicate 13.569753529026
Replicate 23.7429121872395
Replicate 35.4101992777827
Condition 3: 24 Hour
Replicate 15.4295462018004
Replicate 24.1204749331208
Replicate 35.8146602083982


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_52372.p1 GENE.R_Transcript_52372~~R_Transcript_52372.p1 ORF type:5prime_partial len:926 (+),score=106.50,RVT_1|PF00078.23|1.5e-42 R_Transcript_52372:1-2778(+)
ATCCTTTGGAGGTCGGATCGGGTTCATTTTAACCTAATCCAGAAAAAGGATCAGATGATCCATGGCGTAATAAAGGTCAGTCACTCTCCAATTTCTTTCTTTTTGTCTGCTATTTATGCTAGCCCAAAATATAGAAATAGGAAAAATTTGTGGACTGATTTGAATATTTGTGCTGATTCTATCACTGGAGCTTGGCTAGCCATAGGAGATTTTAATGAGATGCTTAGTGATTGTGAAAAGTTTGGGAAACAGCCGGTCAGTAGTTACAAATGTAGGGTGTTTCAGGACACCATTGATAAGTGTGGTCTAGTTGATCTAGGTTTTGTGGGACAAAAATTCACTTGGACCAACAAAAGAGAGGGAGCGCTTATTATGGAAAGATTGGACAGGGCCCTTATCAATGCTGATTGGATTTCTATGTACCCTGAATCTCACTTACTGCACCTACCTAGAATCACTTCGGACCATTGCCCTATTCTTTTGAAGACAACCACTAAATTAGCCAAACACTATTGTAAACCATTTAGAATGGAACCCTGGTGGACTTTCGATCATGAATTTCCAAGCCTTCTTCAACAGTTTTGGGACCACGGCAAGGACCCTATGAGTAATGTAGCCCTGTTAGCCAAACCTATTAGTAATTGGGCTAGAAATCGTTTTGGGAATCTGGGTAGGAAAAAGAAGAAACTCCTTGCTAGACTCCATGGGGTTCAGAAGGACATTTGTTACTCCCCTAACTGTATCTATTTGATTGAACTTGAGAAATTGCTAACTACTGAATTGGAGGAGATTCTTAATTATGAGGAGTATTACTGGCTTACTAGATCTAGGCATAACTGGATAACACAGGGAGATAGGAATACTTCTTTCTTTCATAAGTTTGTTCTGTTTAGGAGGAAAACCAATAGAATTCTATCGCTTAGGAACAATGTTGGGGAAGAAATCTCTGACCCCCAGCTTCTGAATGACCACATTAGAGATCATTTCTTAACCTTGCTTACCACTGATAAGCCACTCTCCTGGGCACATCCACAGTGGCTCTTCCCTTCAACCAATGAGGTCATTAAGGTAGGGCACCCACCTACTACTGAGGAAGTTAGGAGGGGGATTTTTGGCCAGGGGAGCTATAAGGCCCCAGGCCCGGATGGGTTCCATGCCCTTTTCTATCAAAAATTTTGGGACACTGTTGGCTCTGACTTGATTCTCTCTACATCTACCATCTTCTCTTCGACCACCTTCCCTATAGGTTTCAATAGAACTCTAATCAGCTTAATTCCCAAGTGCCCTAACCCCCAGTTTGTCAAGCAACTTAGACCCATAAGTCTGTGCAATACCAACTATAAAGTGGTGTCAAAAATACTTGTGGATAGAATCAGGCCCCACCTCAAAAGCCTCATTTCTCCTAACCAGAATAGCTTCATACCTGGCAGAGGTTCTGATGTAAACTACATTGTTGCCTCTGAGATCTTACATTCCATGGGGAAGAGGAAGGGTAGGAAAGGGTGGTTTGCACTCAAACTTGATCTGGAAAAGGCGTATGATAGAATGGAATGGGACTTCATAAGGAACATGCTTTTCTCCTTTAATTTTGATTATCACTCTATCTGCCTCATTATGGAGTGTATCACCTCTGTTACTACTTCTATCCTTGTCAATGGGGGGATCACTGAGGAGTTTAAACCTTCCCGGGGCCTGAGACAGGGAGACCCTCTCTCACCCTACATTTTCATCCTATGTATGGAGTTTTTATCAAAACTCATCCATAATGCTTGTGAAGAGGGAAATTGGTCCCCCTTCTCCTTCACTCACTCAGGCTTGTCCATCTCCCACCTCCTCTTTGCGGATGATGTCATCCTCTTTGGAGAGGCCAACCCCAGAACCCTAGCTGCTATGACCTCTACCTTACATTCCTTTTGCCAAGCCTCGGGTCAACAAATTAATGCAAGCAAAAGCAAATTGTTCTTCTCTCCAAACACCTCAGCTGAGATGATCCAGACCTTTGAGGACTCCCTGGGCACTAGTGCTTCTGGAGACCTAGGGACTTACCTTGGCCTACCTTTGACCATTAAGAGGCCCACAAAGAATCAGCTCCGCGGCATTGTGTCCAAAGTTAGAGACAGGCTTGCATCCTGGAAGACAAAATTCATCACGAAAGCTGGTAGGATGTGTCTTATTAATGCAACACTTAATGCCATCCCAAATTACTACATGCATGGAATAGCCTTCCCTAAAAGCCTGACAACTGAGATGAATAAAATTGTTAACAACTTTCTTTGGGGGGATTCCTCAGATCATAAGAAACTGCATCTAGTGAGTTGGGAAACTGTCACCAACCTCAAGAAGCAAGGAGGGCTAGGAATTAGAGATCTCAAAGATTTGAATCTAGCTCTCATGGCCAAGCTTGGGTGGAAATCCCTCCTATCTGAGGACAATCTGGCTGGGCAGGTCCTCAAGGACAAATATATTAACAAGAAGCCCTATCCCACCAACTTTAGAGCTGGCTCCCATGTGTGGCAAGACATAGGTAAGGGTTGGGACATCATTGATGGACATGTCTTATGGACCTTGGGTAATGGATCCTCCATTCTATTTTGGACGGATCAATGGCTTTCTTGTGGTAGATTGAGAGACCTCATTGAAGGTCCCCTTACTCCCCAGGAAATTACTCTAAAGGTCAGAGACTGCTTGACCAACAACACCTGGGATCTTAATAAAATTTCCTTCACTCTCCCCCAGGTAATCATGGACTGCATCCTCTTTTCCCCCCATCCCTTCTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_52372.p1 GENE.R_Transcript_52372~~R_Transcript_52372.p1 ORF type:5prime_partial len:926 (+),score=106.50,RVT_1|PF00078.23|1.5e-42 R_Transcript_52372:1-2778(+)
ILWRSDRVHFNLIQKKDQMIHGVIKVSHSPISFFLSAIYASPKYRNRKNLWTDLNICADSITGAWLAIGDFNEMLSDCEKFGKQPVSSYKCRVFQDTIDKCGLVDLGFVGQKFTWTNKREGALIMERLDRALINADWISMYPESHLLHLPRITSDHCPILLKTTTKLAKHYCKPFRMEPWWTFDHEFPSLLQQFWDHGKDPMSNVALLAKPISNWARNRFGNLGRKKKKLLARLHGVQKDICYSPNCIYLIELEKLLTTELEEILNYEEYYWLTRSRHNWITQGDRNTSFFHKFVLFRRKTNRILSLRNNVGEEISDPQLLNDHIRDHFLTLLTTDKPLSWAHPQWLFPSTNEVIKVGHPPTTEEVRRGIFGQGSYKAPGPDGFHALFYQKFWDTVGSDLILSTSTIFSSTTFPIGFNRTLISLIPKCPNPQFVKQLRPISLCNTNYKVVSKILVDRIRPHLKSLISPNQNSFIPGRGSDVNYIVASEILHSMGKRKGRKGWFALKLDLEKAYDRMEWDFIRNMLFSFNFDYHSICLIMECITSVTTSILVNGGITEEFKPSRGLRQGDPLSPYIFILCMEFLSKLIHNACEEGNWSPFSFTHSGLSISHLLFADDVILFGEANPRTLAAMTSTLHSFCQASGQQINASKSKLFFSPNTSAEMIQTFEDSLGTSASGDLGTYLGLPLTIKRPTKNQLRGIVSKVRDRLASWKTKFITKAGRMCLINATLNAIPNYYMHGIAFPKSLTTEMNKIVNNFLWGDSSDHKKLHLVSWETVTNLKKQGGLGIRDLKDLNLALMAKLGWKSLLSEDNLAGQVLKDKYINKKPYPTNFRAGSHVWQDIGKGWDIIDGHVLWTLGNGSSILFWTDQWLSCGRLRDLIEGPLTPQEITLKVRDCLTNNTWDLNKISFTLPQVIMDCILFSPHPF*

Click here to download the sequence:
Link to NCBI Protein BLAST