Transcript Information: R_Transcript_52380.p1


Annotated TAIR IDAT5G13660.2
Annotated Gene Nameunknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G59830.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:4405094-4406983 | Forward length=537
E-Value2.1E-82
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 19.042751298668
Replicate 27.8591656604125
Replicate 37.0191287679953
Condition 2: 8 Hour
Replicate 19.3001358606968
Replicate 29.8469938383203
Replicate 310.058323683224
Condition 3: 24 Hour
Replicate 110.446855399029
Replicate 28.7006984614204
Replicate 39.839426877596


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_52380.p1 GENE.R_Transcript_52380~~R_Transcript_52380.p1 ORF type:complete len:545 (+),score=97.64,Jas|PF16135.1|7.7e-07 R_Transcript_52380:507-2141(+)
ATGTCTTTTCAGAGCAAGGGGTTCTGGATGTCGAAGGACGGTGGGTGCTTAACTGACGGGGAAATAACAACATATGATAATAATGTTTCTAGAATCGAACCCAAGCGCCCCCATCAATGGTTCACGGACAGTGGTGAGGCCGAGCTGTTCCCCAACAAGAAGCAAGCTGTGGAGAGCAGCGCTTCGTTTGGTGGTATGTCGGCCTCAACTCTTTCCCCCTGGGGAACCATGTCTGGGTTTAACTCGGTGCCTGGGCAAGTTAGTGACCGTTTGTTTGATGCTGAAGCTACTAGGAATGTTAGTTTCGATGACAGGAATATTGGTTCCGTAAATGCTGGAAACTTGGATATGGTGAATAGTTCGTCCTTTGTTTTATCTATAGTTCAAACACTGCAAGATTCCAAGTCGGGGGTCAATTATGGGGGGTTTAGGAAGGTTAAAATTAGTGAAGTAAGGGATTCCGAGAACATCATGCCTATGTTGGTGGGTAATTCATATACTAGGGAAGATAGCAATGTCTTGTCAACGGGTCATGACTATAACAAGGTGGATGATAGTGGCATATCAATGGGTTTAACATATGGTCAAGAGGAGGACAATGTTCTAACTGCGGGGGACTCCTATTGTAGGGAGGACGACAACTTTATATCTGTGAGTCAGTCATTTAACAGAGGTGATGTCAGCACAATGGCCATGGGACATAATTATAAGGCTGATAATAACACCATACCAATTGTGAGTTTGTATGGCAAAGGTGATGGTAATATTATGTCAATGGCTGAGAATTTCAACAAGGGAGATAACAGTGTCACGTCCGTGAGTCAAACCTATAGAAGTTGTGACAGCTCAATCTCAATGGGTAACACTTGTAGCAAAGGGGATGACAGCACTGCATCAATTTCTCAATCGAGCAACAAAGGTGACACCCATATGTTATCAATGAGTCACTCTTTTGACAAAGGGGCAAGTAACATAATATCATTTGGTGGTTATAATGATGACGACGATGCCAATGCCTCTGGAAGACTGATATGCACTTATGACTTGCTAATGGGTCAGTCTTCAGTTCCAAGATCAGATCCAATAGGCCAGAAGGACTTGGTTGTTTCAGATGCTAATGCACTTATAAATACTGCTCAAGTTCTTGCTGTAGCAGAAAGTGCCTCCAAGAAGAAAGAGGATCAAAAGTCAACAAAGAAGACACCACCGAACAATTTCCCTTCAAATGTCAGAAGTTTGCTTTCCACTGGTATTTTGGATGAGGTTCCTGTAAAGTACATTGCCTGGTCAAGAGAGAAGGAGCTTCGTGGTATCATAAAAGGTTCTGGATATCTTTGTGGTTGTCAATCTTGCAACTTTTCCAAGGTCATCAATGCTTATGAGTTTGAGCGACACGCTGGTTGCAAAACAAAACACCCAAACAATCACATTTACTTTGAGAATGGGAAAACCATTTATGGTATTGTACAGGAGCTGAGGAGTACTCCACAGAATATGTTGTTTGATGTTATACAAACAATAACTGGCTCGCCTATAAATCAGAAATCTTTCCGCCTTTGGAAAGAATCTTTCCTGGCTGCTACCCGTGAACTGCAGCGTATTTATGGTAAGGATGATAGGAATCAGCCATTGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_52380.p1 GENE.R_Transcript_52380~~R_Transcript_52380.p1 ORF type:complete len:545 (+),score=97.64,Jas|PF16135.1|7.7e-07 R_Transcript_52380:507-2141(+)
MSFQSKGFWMSKDGGCLTDGEITTYDNNVSRIEPKRPHQWFTDSGEAELFPNKKQAVESSASFGGMSASTLSPWGTMSGFNSVPGQVSDRLFDAEATRNVSFDDRNIGSVNAGNLDMVNSSSFVLSIVQTLQDSKSGVNYGGFRKVKISEVRDSENIMPMLVGNSYTREDSNVLSTGHDYNKVDDSGISMGLTYGQEEDNVLTAGDSYCREDDNFISVSQSFNRGDVSTMAMGHNYKADNNTIPIVSLYGKGDGNIMSMAENFNKGDNSVTSVSQTYRSCDSSISMGNTCSKGDDSTASISQSSNKGDTHMLSMSHSFDKGASNIISFGGYNDDDDANASGRLICTYDLLMGQSSVPRSDPIGQKDLVVSDANALINTAQVLAVAESASKKKEDQKSTKKTPPNNFPSNVRSLLSTGILDEVPVKYIAWSREKELRGIIKGSGYLCGCQSCNFSKVINAYEFERHAGCKTKHPNNHIYFENGKTIYGIVQELRSTPQNMLFDVIQTITGSPINQKSFRLWKESFLAATRELQRIYGKDDRNQPL*

Click here to download the sequence:
Link to NCBI Protein BLAST