Transcript Information: R_Transcript_52429.p1


Annotated TAIR IDAT5G56680.1
Annotated Gene NameClass II aminoacyl-tRNA and biotin synthetases superfamily protein
Annotated Gene Symbol(s)SYNC1, EMB2755, SYNC1 ARATH
Annotation TypeOrtholog
Chromosome Positionchr5:22936645-22938841 | Forward length=572
E-Value3.4e-316
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 187.710280798201
Replicate 269.692983136203
Replicate 374.989425183194
Condition 2: 8 Hour
Replicate 170.149855190967
Replicate 279.126138023985
Replicate 393.337492505885
Condition 3: 24 Hour
Replicate 1100.89352123754
Replicate 288.878823985362
Replicate 3106.75055970101


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_52429.p1 GENE.R_Transcript_52429~~R_Transcript_52429.p1 ORF type:complete len:570 (+),score=130.38,tRNA-synt_2|PF00152.16|3.7e-13,tRNA-synt_2|PF00152.16|3.2e-59,tRNA_anti-codon|PF01336.21|6.1e-12,tRNA_anti-codon|PF01336.21|2.6e+03,WHEP-TRS|PF00458.16|2e-06 R_Transcript_52429:324-2033(+)
ATGACAGAAAAACAGCTCTCATCTCCACCAGTGGCAGAGATGTCAGCCGCAACCCTCAACGACACAACCACAATCCAAAAAGCCCAGTTCTCACAACGTGTCCCAATTCGGTTCATTCTCTGCCTTCCAGACGGCGGATCCTCTTTAGCGGGCCAACATGTAACGGTTGGTGGCTGGGTCAAGACAGGCCGTGAGCAAGGCAAAGGCTCTTTCGCTTTCCTTGAGCTCAATGATGGGTCGTGTCCTGCTAACCTTCAGGTTATAGTTGATGGGTCAGTTCATGATCTGGGTGCCCTTGTTCCTACTGGCACCTGTGTGCATGTTACTGGTGAACTCAAAACACCCCCTGAAGGGACTAAACAGAAGATTGAGTTGAGAGTTAAGGAGGTTCTTCATGTGGGCCCTGTTGATCCTGCCAAGTACCCCTTGCCTAAGACCAGATTGACTCTTGAGTTCTTGAGGGATTTTGTTCATCTTAGGCCCCGCACTAACACGATTTCTGCAGTTGCTCGAATTCGCAATGCCCTAGCATATGCAACTCATACATTCTTCCAAAAGCATGGGTTCATGTATATACATACACCTATCATCACTACTAGTGACTGTGAGGGTGCAGGTGAGATGTTTCAAGTCACAACGTTGATCAGTGAGGCTGAGAAGGTGGAGAAAGAAATGAAGGAGAATCCACCTCCATCAGAAGTTGACATAGAAGCGGCAAAGCTTGTTGTTCAGGAGAAAGGGGAAGCTGTTAAAAAACTGAAGGCAGACAAGGCGAGCAAACAGGAAATAACTGCTGCTGTTACAGAACTGAACAAATCAAAAGATAATGTTGCAAAGTTGGAAGAGAGAGCTAAGCTTACTCCTGGACTTCCCAAAAAGGACGGAAAAGTAGATTATGCCAAAGATTTTTTTGGCCGTCAAGCATTCTTGACTGTCTCAGGGCAATTGCAAGTAGAATCTTTTGCGTGTTCCCTTAGTAGTGTTTACACATTTGGGCCTACATTTCGTGCTGAGAACTCTCACACTTCAAGGCATCTGGCTGAGTTTTGGATGGTTGAGCCAGAAATAGCATTTGCTGATCTTCAGGATGATATGAATTGCGCAGAGGCATATGTAAAGTTTTTGTGTCAGTGGCTACTGGACAACTGCCTGGATGATATGGAATTTATGGCCAAAAACTTTGACAAGAGTGCTGTTGACCGTTTGAAAATGGTTGCCTCAACTCCTTTTGAGAGGATTACTTACACAGATGCAATTGACTTGCTAGAACAAGTAAAAGATAAAAAATTTGAGAACAAAGTTGAATGGGGGATTGATTTGGCATCTGAGCATGAAAGGTACTTGACTGAGGTCCATTTTAAGAAACCTGTCATAGTATATAACTACCCAAAAGGAATTAAAGCATTTTATATGAGGCTCAATGATGATGGGAAAACTGTGGCTGCCATGGATGTGCTTGTGCCAAAGGTTGGGGAGTTGATTGGGGGAAGCCAGAGAGAGGAACGTATTGATGTCATCGAGAAAAGGATTTTGGACATGGGATTGCCTCTGGAGCCATACGAATGGTACCTTGACCTCAGGCGCTATGGCACTGTGACGCATAGTGGATTTGGTTTGGGATTTGAGAGGATGATTTTATTTGCGACGGGCATTGATAATATCAGAGATGTTATTCCATTCCCGCGTTACCCAGGAAGAGCAGATCTGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_52429.p1 GENE.R_Transcript_52429~~R_Transcript_52429.p1 ORF type:complete len:570 (+),score=130.38,tRNA-synt_2|PF00152.16|3.7e-13,tRNA-synt_2|PF00152.16|3.2e-59,tRNA_anti-codon|PF01336.21|6.1e-12,tRNA_anti-codon|PF01336.21|2.6e+03,WHEP-TRS|PF00458.16|2e-06 R_Transcript_52429:324-2033(+)
MTEKQLSSPPVAEMSAATLNDTTTIQKAQFSQRVPIRFILCLPDGGSSLAGQHVTVGGWVKTGREQGKGSFAFLELNDGSCPANLQVIVDGSVHDLGALVPTGTCVHVTGELKTPPEGTKQKIELRVKEVLHVGPVDPAKYPLPKTRLTLEFLRDFVHLRPRTNTISAVARIRNALAYATHTFFQKHGFMYIHTPIITTSDCEGAGEMFQVTTLISEAEKVEKEMKENPPPSEVDIEAAKLVVQEKGEAVKKLKADKASKQEITAAVTELNKSKDNVAKLEERAKLTPGLPKKDGKVDYAKDFFGRQAFLTVSGQLQVESFACSLSSVYTFGPTFRAENSHTSRHLAEFWMVEPEIAFADLQDDMNCAEAYVKFLCQWLLDNCLDDMEFMAKNFDKSAVDRLKMVASTPFERITYTDAIDLLEQVKDKKFENKVEWGIDLASEHERYLTEVHFKKPVIVYNYPKGIKAFYMRLNDDGKTVAAMDVLVPKVGELIGGSQREERIDVIEKRILDMGLPLEPYEWYLDLRRYGTVTHSGFGLGFERMILFATGIDNIRDVIPFPRYPGRADL*

Click here to download the sequence:
Link to NCBI Protein BLAST