Transcript Information: R_Transcript_52492.p1


Annotated TAIR IDAT1G60770.1
Annotated Gene NameTetratricopeptide repeat (TPR)-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:22366959-22368648 | Reverse length=491
E-Value1.3E-234
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 119.442563298
Replicate 211.289253176991
Replicate 316.561897854652
Condition 2: 8 Hour
Replicate 111.669434618443
Replicate 211.840792828326
Replicate 318.373422562795
Condition 3: 24 Hour
Replicate 125.809999164343
Replicate 222.279854194962
Replicate 323.314194605392


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_52492.p1 GENE.R_Transcript_52492~~R_Transcript_52492.p1 ORF type:complete len:491 (+),score=112.87,PPR|PF01535.16|0.0012,PPR|PF01535.16|0.00018,PPR|PF01535.16|0.0033,PPR|PF01535.16|0.11,PPR|PF01535.16|4.3,PPR|PF01535.16|2.2,PPR|PF01535.16|0.035,PPR|PF01535.16|1.4e+03,PPR|PF01535.16|44,PPR_2|PF13041.2|3.9e+02,PPR_2|PF13041.2|0.013,PPR_2|PF13041.2|1.3e-06,PPR_2|PF13041.2|0.0027,PPR_2|PF13041.2|0.32,PPR_2|PF13041.2|88,PPR_2|PF13041.2|1.9e+02,PPR_2|PF13041.2|0.0017,PPR_2|PF13041.2|32,PPR_2|PF13041.2|51,PPR_3|PF13812.2|0.68,PPR_3|PF13812.2|4.1e-05,PPR_3|PF13812.2|0.35,PPR_3|PF13812.2|4.6,PPR_3|PF13812.2|8.1e+02,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|2.8e+02,PPR_3|PF13812.2|90,PPR_3|PF13812.2|1.5e+03,PPR_3|PF13812.2|8.3e+03,TPR_12|PF13424.2|1.1,TPR_12|PF13424.2|0.2,TPR_12|PF13424.2|1.8e+02,TPR_12|PF13424.2|1.6e+02,PPR_1|PF12854.3|0.012,PPR_1|PF12854.3|1e+03,PPR_1|PF12854.3|1.7e+02,PPR_1|PF12854.3|1.8,PPR_1|PF12854.3|2.3e+03,TPR_8|PF13181.2|8.9e+03,TPR_8|PF13181.2|0.096,TPR_8|PF13181.2|15,TPR_8|PF13181.2|2e+02 R_Transcript_52492:125-1597(+)
ATGGCGACAATAACATTGAAAGGGAGAACAAAGAACATCGCGAACAGGTCGAAGAAGTACGTAGAAGAAGCTCTTTACAAAAGGCTCTTCAAAGAAGGTGGTGATGAGGTCAGCGTTCGTCATCAATTGAATGTTTTCCTTAAGAGTCGCAAACGGGCTTACAAATGGGAAGTTGGTGACACTATCAAGAAGCTCCGAGATCGCCAACATTATTATGCTGCTCTCAAGCTTTCTGACACTATGGCTAGGAGGGGAATGAACATGACAGTGAGTGACCAAGCTATCCATCTTGATCTCATTGCGAAGACTCACGGCATTGCTGCAGCAGAAAATTACTTCATTGATCTTCCCGAAGCTTCGAAAAACATAGAGTGTTATGGTGCTCTTCTCAATTGCTACTGCAAAGAGTTGATCTTAGAGAAAGCTGAAGCACTTGTAGAAAAGATGAAGGAGCTATGCCTTCCTATTACTGCCCTGTCGTACAATAGCTTGATGACACTGTACACAAAAACTGGTCAGCCAGAAAAAGTACCAGCTCTGGTACAAGAAATGAAAGCATCTGATATCATGCTTCAAACATACACATATAATGTCTGGATGAGGGCCTTGGCAGCAGTTAAAGACATCTATGGAGTTGAGAGAGTTTTGGATGAGATGAAGCGGGATGGACGAGTTGCAGAAGATTGGACTACTTATAGCAATTTGGCATCAATTTACGTTAATATTGGCATGTCTGACAAGGCTGAAAATGCTCTTAAGGAGCTTGAGAAGCGGAACACCACTAGGGACCTTTCAGCTTACCAATTCCTCATTACTTTGTATGGAAAAACAGGGAATTTGCTTGAGGTTTACCGGATTTGGCGTTCTTTGCAGCTTGCATTTCCTAAAACCCCAAATGTAGCCTACTTGAACATGATTCAAGTGTTGGTCAACTTGAAGGATATACCAGGTGCGGAGAAATGCTTCAGAGAATGGGAATCCAGCTGTACTACTTATGATATGCGGGTAGCAAATGTCCTTATTAGAGCATATGCCAAAGATGGTTTGCTTGTGAAGGCGCAAGAGCTCAAAGAGCATGCTCGGAGGAGAGGGGCCAAAGCTAATGCTAAAACTTGGGAAATCTTTTTGGATTATCACCTGAAGAAAGGGGAAGTCAAGTCAGCCATTGATTGTGTTGAGAACGCAATTGCAGCTGCTAAAGCAGAGCGAAACAAGTGGGTCCCATCAGCTGAGATGGTCAATACATTGATGGCACACTTTGAACAGAACAAGGATGTTGAAGGGGCAGAAGGGTTTCTGTCAATCCTGAAGAAAGCTGTTGATAGCTTCGGGGTAGAGGTGTTTGAATCATTGATCAGGACATATGTGGCTGCTGAAAGAACTAGTCCTTCAATGCGTCGCCGCTTGAAGATGGAAAACATACAGGTAAATGAGACCTGTAACAAGTTGCTTGATGTGGTTTGTGCAGAATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_52492.p1 GENE.R_Transcript_52492~~R_Transcript_52492.p1 ORF type:complete len:491 (+),score=112.87,PPR|PF01535.16|0.0012,PPR|PF01535.16|0.00018,PPR|PF01535.16|0.0033,PPR|PF01535.16|0.11,PPR|PF01535.16|4.3,PPR|PF01535.16|2.2,PPR|PF01535.16|0.035,PPR|PF01535.16|1.4e+03,PPR|PF01535.16|44,PPR_2|PF13041.2|3.9e+02,PPR_2|PF13041.2|0.013,PPR_2|PF13041.2|1.3e-06,PPR_2|PF13041.2|0.0027,PPR_2|PF13041.2|0.32,PPR_2|PF13041.2|88,PPR_2|PF13041.2|1.9e+02,PPR_2|PF13041.2|0.0017,PPR_2|PF13041.2|32,PPR_2|PF13041.2|51,PPR_3|PF13812.2|0.68,PPR_3|PF13812.2|4.1e-05,PPR_3|PF13812.2|0.35,PPR_3|PF13812.2|4.6,PPR_3|PF13812.2|8.1e+02,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|2.8e+02,PPR_3|PF13812.2|90,PPR_3|PF13812.2|1.5e+03,PPR_3|PF13812.2|8.3e+03,TPR_12|PF13424.2|1.1,TPR_12|PF13424.2|0.2,TPR_12|PF13424.2|1.8e+02,TPR_12|PF13424.2|1.6e+02,PPR_1|PF12854.3|0.012,PPR_1|PF12854.3|1e+03,PPR_1|PF12854.3|1.7e+02,PPR_1|PF12854.3|1.8,PPR_1|PF12854.3|2.3e+03,TPR_8|PF13181.2|8.9e+03,TPR_8|PF13181.2|0.096,TPR_8|PF13181.2|15,TPR_8|PF13181.2|2e+02 R_Transcript_52492:125-1597(+)
MATITLKGRTKNIANRSKKYVEEALYKRLFKEGGDEVSVRHQLNVFLKSRKRAYKWEVGDTIKKLRDRQHYYAALKLSDTMARRGMNMTVSDQAIHLDLIAKTHGIAAAENYFIDLPEASKNIECYGALLNCYCKELILEKAEALVEKMKELCLPITALSYNSLMTLYTKTGQPEKVPALVQEMKASDIMLQTYTYNVWMRALAAVKDIYGVERVLDEMKRDGRVAEDWTTYSNLASIYVNIGMSDKAENALKELEKRNTTRDLSAYQFLITLYGKTGNLLEVYRIWRSLQLAFPKTPNVAYLNMIQVLVNLKDIPGAEKCFREWESSCTTYDMRVANVLIRAYAKDGLLVKAQELKEHARRRGAKANAKTWEIFLDYHLKKGEVKSAIDCVENAIAAAKAERNKWVPSAEMVNTLMAHFEQNKDVEGAEGFLSILKKAVDSFGVEVFESLIRTYVAAERTSPSMRRRLKMENIQVNETCNKLLDVVCAE*

Click here to download the sequence:
Link to NCBI Protein BLAST