Transcript Information: R_Transcript_52569.p1


Annotated TAIR IDAT5G12410.1
Annotated Gene NameTHUMP domain-containing protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:4021974-4023950 | Reverse length=376
E-Value1.8E-134
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.99111100206618
Replicate 20.095005884236643
Replicate 30.88102836908279
Condition 2: 8 Hour
Replicate 10.72017249844839
Replicate 20.60708276491907
Replicate 30.36960293118435
Condition 3: 24 Hour
Replicate 12.1295703537011
Replicate 20.79838041232859
Replicate 30.94087418337341


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_52569.p1 GENE.R_Transcript_52569~~R_Transcript_52569.p1 ORF type:5prime_partial len:442 (+),score=91.84,THUMP|PF02926.13|4.4e-10 R_Transcript_52569:2-1327(+)
TTCAGCAAATTTGGGGTTTGCGGAGTTATATCAATCAAACGACGTCGTTTTCATGCTATTGCAGTGAAACGGTGCGTATTATCCTTGAAATTAATTCCTAAACCCTCTTCTCCAGTCAAGAATTCAGGCTTCACTCACGTTCTCTGGGGAGTCGTCATGGGCGAAGCAAAAATAGCAATCAACGATGGCAAGAAACGCAGAAGATGTTACTTACCTCATAACAAACCAGTAAAGAGGAAGGGACCAATCCCATTAAGGCCAGGAGTGCAAGGCTTCTTCATAACCTGTGATGGTGGAAGGGAACGCCAGGCTTCTCATGAAGCCCTCAATGTTCTTGACTCTTTCCTCGAAGAACTAATCGACGGGAAGGAGCCCAAGACAGATGTTGCAGCAATACCTGAGAAACCATTGAACAAGAAGATAACATTTACGTATTCTGATTCTTCTGATAGTGGAGAAGATGATGAAGATGACAATGATAATAAAACTGAGGGGGAAGAGGAGAACAAGTCAGAAATACCTGCTAAAGATGATGTAAATAATGAAAGTCCCAAGGACGGAAGTTCTGATCATGCAAAGAAGGATGATCAAGAGCATGAGGTTCCATCTGAGAAAACTGCTGAAGAAGATAAAGAAGTTAGTAAGCAACAGGAAGATAGCGAAAACAAGGAGAGTGAGGAACCACCAGCAAAGAAACAATGCTGTGATAACGAAGTATTAGAAAGCAAAAATCATGTCCCTGATAAAAAAGCGAAGTCTGTTGATCAGTTAATTGAAGATGAGCTGAAGGAATTAGGAGATAAGAGCAAGAGGCGATTTTCCAAACTTGATACGGGTTGTAATGGTGTTGTCTTCATTCAAATGCGAAGAAGCCAGGGAGATCCCAGCCCGACAGATATCGTACAACACATGATGGAATCCTCGGCCAGGACAAAGAAACATATCTCTAGGTTTCTGCTTAGAGTCTTACCTGCAGAAGTCTCATGCTATGCTTCTGGGGAAGAAATCTCAAGATCCATGAAACCACTTGTTGAGCGATACTTTCCAGTCGATGCAGAGGCTCCGGTTAAGTTTGCAGTCAAATATGATGCTCGTGCAAATTCAGGGATTGACAGGATGACAATAATAGATGCAGTTGCAAAATCTGTTCCTGGACCGCACAAAGTGGATCTCAAAAATCCAGAGAAGACCATTGTAGTCCAAATCATTAAGCTTCTCTTTCACCTTGTCTTGTCCAGACTGTATGTATGCTTGATTGGGGTTGTGGAGAAGTACAAGGAGCTTGCGAAGTACAATTTGAGACAACTAACATCATCTCACCCGTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_52569.p1 GENE.R_Transcript_52569~~R_Transcript_52569.p1 ORF type:5prime_partial len:442 (+),score=91.84,THUMP|PF02926.13|4.4e-10 R_Transcript_52569:2-1327(+)
FSKFGVCGVISIKRRRFHAIAVKRCVLSLKLIPKPSSPVKNSGFTHVLWGVVMGEAKIAINDGKKRRRCYLPHNKPVKRKGPIPLRPGVQGFFITCDGGRERQASHEALNVLDSFLEELIDGKEPKTDVAAIPEKPLNKKITFTYSDSSDSGEDDEDDNDNKTEGEEENKSEIPAKDDVNNESPKDGSSDHAKKDDQEHEVPSEKTAEEDKEVSKQQEDSENKESEEPPAKKQCCDNEVLESKNHVPDKKAKSVDQLIEDELKELGDKSKRRFSKLDTGCNGVVFIQMRRSQGDPSPTDIVQHMMESSARTKKHISRFLLRVLPAEVSCYASGEEISRSMKPLVERYFPVDAEAPVKFAVKYDARANSGIDRMTIIDAVAKSVPGPHKVDLKNPEKTIVVQIIKLLFHLVLSRLYVCLIGVVEKYKELAKYNLRQLTSSHP*

Click here to download the sequence:
Link to NCBI Protein BLAST