Transcript Information: R_Transcript_52691.p1


Annotated TAIR IDAT5G25060.1
Annotated Gene NameRNA recognition motif (RRM)-containing protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:8634219-8639984 | Reverse length=946
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 120.510143078623
Replicate 218.481650999351
Replicate 320.408631840779
Condition 2: 8 Hour
Replicate 119.14522838621
Replicate 224.059176664567
Replicate 322.888350295425
Condition 3: 24 Hour
Replicate 125.327356951304
Replicate 221.325094526138
Replicate 324.935359769883


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_52691.p1 GENE.R_Transcript_52691~~R_Transcript_52691.p1 ORF type:5prime_partial len:1027 (+),score=252.73,Surp|PF01805.16|1.6e-15,RRM_1|PF00076.18|1.1e-13,cwf21|PF08312.8|1.6e+04,cwf21|PF08312.8|7.5e-09,RRM_6|PF14259.2|2.8e-06,CTD_bind|PF04818.9|3.1e-05,CTD_bind|PF04818.9|1.6e+04 R_Transcript_52691:1-3081(+)
CTTTCCTCCTCCAACATTATGAATTCACGACAATCCCCCACCCCACCTTCCTCCAAATCAAAATCAAAACCAAAACAAAAAAAAGCCCCATCCCCCTCACTTCCATCCGTCACAACCACTACCGGCGACAGCACAGTCATCGCGCCGCTCAGCCCGCAACCACCATCACGAGAGATGAGTTCTTTTTCGATTACGCGAAAGAAGACTCCATTCCAAAAGCACAGAGAAGAAAAGGAAGCAAAAAAGAAGAGGGCAGAAGATGAAACAGCTCGTTTGTATGAGGAATTTCTTGAATCATTCCAAGGGGAGGACCTTCCAGGTTCGAAGGCTTTTGTACGAGGAGGCACAATTAATCCCAATGAGAAAGCGAAAGTCGACTCTGGAGGTGGAAATTCCAAGGATGGTGTATCTGGTTCAAAGAAGGGGAGTAGCAGCAGATATGTTCCATCATTCTTACCACCTCCGATGGCAGCTAAAGGCAGAGAACCTGAGCGGGAGGAACCTAAAGATAAACCGAAAGAGAAAGAGAAAGGTAGATCGAGAAATATTGACAATTTTATGGAGGAGTTAAAGCAAGAGCACGAAATAAGAGAGAAGGAAAAAAAAGATAAATGGCGAGATGGGCGTCTTGATGAACATACTGCTCCATTTACACGATTCGATGAGCTTCCTGATGAATTTGATGCCAGTGGGAGAGGGTCATTTGATGATGGTGATCCACAAACTACGAATCTCTATGTTGGAAATCTTTCTCCAAAGGTGGATGAGAATTTTCTGTTGCGAACCTTTGGGAGGTTTGGACCCATTGCTAGTGTGAAAATCATGTGGCCTAGGACAGAAGAAGAACGAAGGCGGCAAAGAAATTGTGGCTTTGTTGCTTTTATGAATAGAGCTGATGCACAGGCTGCAAAGGATGAAATGCAAGGTGTTGTTGTGTATGAATATGAGTTGAAGATTGGATGGGGTAAATCTGTTGCTCTTCCATCTCAAGCGCTACCTGCCCCTCCGCCTGGTCACATGGCTATCCGAAGTAAAGAGGGTGGTACTGTAATCTTGTCTGGCTCAGGTACCCCTGTGACACCTGTCCCAAATCAGAATTCTGAATTGGTCCTTACACCTAATGTACCGGATATAATGGTCGTACCTCCTGAGGATAAACATCTTCGCCATGTCATTGATACCATGGCTTTATATGTTTTGGATGGAGGCTGTGCCTTTGAGCAAGCGATAATGGAGCGTGGCCGTGGGAATCCGCTTTTTAGTTTCTTGTTTGAACTCGGTTCAAAGGAACACATGTACTACGTTTGGAGGCTTTATTCCTTTGCTCAGGGTGACACACTACAGAGGTGGAGAACAGAACCCTTCATTATGATTACTGGTAGTGGGAGGTGGGTGCCTCCATCACTTCCTACAGCTAGAAGTCCAGACCTTGAAAAGGAGTCTAGCTCAACATATGCCGCAGGAAGGAGCAGGCGAGTAGAGACTGAAAGGACACTTACAGACTCGCAGAGGGATGAGTTTGAGGATATGCTGCGTGCTTTGACATTGGAAAGGAATCAGATTAAAAATGCTATGGGATTTGCTTTGGATAATGCTGATGCAGCAGGCGAGATAGTTGAGGTTTTAACGGAGTCTTTGACTCTGAAGGAAACCCCTATTCCAACAAAAGTTGCAAGGCTGATGCTTGTGTCTGACATTCTTCATAACAGCAGTGCTCCTGTGAAGAATGCATCTGCATACCGTACTAAATTTGAGGCAACATTGCCTGACATAATGGAGAGCTTCAATGACTTGTACCGTGGCATAACTGGTAGAATTACTGCTGAAGCTCTCAAAGAGCGAGTATTAAAAGTTCTTCAAGTTTGGTCAGACTGGTTTCTGTTTTCAGATGCATATGTGAATGGATTACGAGCTACTTTTCTTCGACCCAGCGCTTCTGGGGTAATACCTTTCCATTCAATATGTTTTGATGCACCAGAACTAGAAGAAAAGGCTGGTTCTGAAGATACCAGTGATGGGAGCAAAGCTTACCAAGATGGAGCATTGGCTATGGGCAAGGGAGCTGCCATGAAAGAGCTCTTAAGCTTGCCCCTTCCTGAGCTGGAAAGGCGTTGTAGACACAACGGACTCTCACTTGTTGGGGGTAGAGAGATGATGGTGGCCCGGTTGCTATACCTGGGAGAAGCAGAAAAGCAAAGGGGAATTGAACTGGAAGAGGACCTGAAATATGCGCAGGTGCATTCAAGCTCAGGTAGGTTTGGAAGTGTGCCGAATGAAACAAATGCTGAGATGGTGGATGCAGGATCATCGACATGGAAACATTACCAGGATGATGAAATTAGATCACAAGCACAAGGATTGGCCTCTTTGCCTCAAGCACTTGGTATACCGCAGCCTAAACTCAAAGCATTTACGAAGAAAGAGAAAGCTGAACCTGTCTTGCCAGCCTCGAAGTGGGCTCGGGAAGATGATGAGGACGATGATGAGCCAAAGCAAGGATCTAGAGGTCTGGGATTGGGATACTCATCTTCTGGGAGTGAGAATGCTGCAGATGATAGTGACAATGCCGAGGAGATTGAAAATGCAGCGTACACTGGTTCTGCAACTCAACCTGAAGTCTCAATAAATGAAGAGCAACGACAAAAATTGAGACGCTTGGAAGTTGCATTGATGGAATACCGGGAATCTCTTGAAGAGCAAGGAACCAAGAGTCCAGAGGAAATTGAGAGGAAGGTTGCAGTGTACAGGAAACATCTTGAATCGGAATATGGCTTATCAGATTCAAGTTCTAATGTTCACTGGAGTAAAAGGATAGAACAAAAAGATGACTCGCGAGAGTCTTCTAGAAAGCGGCATCGCAGCAGAAGTCAAAGTGGGAGCCCAGCACGCAGGAAAAGGGAAAAGGAAGATGCAGACAGGGATCGGCGTGGTAGGGTCAGGGACAGATCCGAAGATTCAGATAGTGAAAAGGCTAGGGACAGAGATAGAGACCGCGAGAAGAGTGGTAGTCTTGACCGGGATTATCATGAAAGGGATAGGGGACGAGAGAGAGACAAGGATAGAAGACGGAGGATGAGATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_52691.p1 GENE.R_Transcript_52691~~R_Transcript_52691.p1 ORF type:5prime_partial len:1027 (+),score=252.73,Surp|PF01805.16|1.6e-15,RRM_1|PF00076.18|1.1e-13,cwf21|PF08312.8|1.6e+04,cwf21|PF08312.8|7.5e-09,RRM_6|PF14259.2|2.8e-06,CTD_bind|PF04818.9|3.1e-05,CTD_bind|PF04818.9|1.6e+04 R_Transcript_52691:1-3081(+)
LSSSNIMNSRQSPTPPSSKSKSKPKQKKAPSPSLPSVTTTTGDSTVIAPLSPQPPSREMSSFSITRKKTPFQKHREEKEAKKKRAEDETARLYEEFLESFQGEDLPGSKAFVRGGTINPNEKAKVDSGGGNSKDGVSGSKKGSSSRYVPSFLPPPMAAKGREPEREEPKDKPKEKEKGRSRNIDNFMEELKQEHEIREKEKKDKWRDGRLDEHTAPFTRFDELPDEFDASGRGSFDDGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADAQAAKDEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGHMAIRSKEGGTVILSGSGTPVTPVPNQNSELVLTPNVPDIMVVPPEDKHLRHVIDTMALYVLDGGCAFEQAIMERGRGNPLFSFLFELGSKEHMYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWVPPSLPTARSPDLEKESSSTYAAGRSRRVETERTLTDSQRDEFEDMLRALTLERNQIKNAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDILHNSSAPVKNASAYRTKFEATLPDIMESFNDLYRGITGRITAEALKERVLKVLQVWSDWFLFSDAYVNGLRATFLRPSASGVIPFHSICFDAPELEEKAGSEDTSDGSKAYQDGALAMGKGAAMKELLSLPLPELERRCRHNGLSLVGGREMMVARLLYLGEAEKQRGIELEEDLKYAQVHSSSGRFGSVPNETNAEMVDAGSSTWKHYQDDEIRSQAQGLASLPQALGIPQPKLKAFTKKEKAEPVLPASKWAREDDEDDDEPKQGSRGLGLGYSSSGSENAADDSDNAEEIENAAYTGSATQPEVSINEEQRQKLRRLEVALMEYRESLEEQGTKSPEEIERKVAVYRKHLESEYGLSDSSSNVHWSKRIEQKDDSRESSRKRHRSRSQSGSPARRKREKEDADRDRRGRVRDRSEDSDSEKARDRDRDREKSGSLDRDYHERDRGRERDKDRRRRMR*

Click here to download the sequence:
Link to NCBI Protein BLAST