Transcript Information: R_Transcript_52727.p1


Annotated TAIR IDAT4G36740.1
Annotated Gene Namehomeobox protein 40
Annotated Gene Symbol(s)HB-5, ATHB40, HB40
Annotation TypeOrtholog
Chromosome Positionchr4:17314649-17316314 | Reverse length=216
E-Value8.7E-53
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.8881267333416
Replicate 20.66443988659171
Replicate 31.4497935187438
Condition 2: 8 Hour
Replicate 13.5643980619408
Replicate 22.9720159409171
Replicate 33.676275568686
Condition 3: 24 Hour
Replicate 12.6154463930296
Replicate 21.256312215286
Replicate 32.9091253064864


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_52727.p1 GENE.R_Transcript_52727~~R_Transcript_52727.p1 ORF type:complete len:158 (+),score=23.66,Homeobox|PF00046.25|1.6e+04,Homeobox|PF00046.25|1.3e-16 R_Transcript_52727:266-739(+)
ATGCAAGATCAATCTGACCTAATCTCTCAGCTTTACCCCGGTTTATACACTCCTACTATGGCTAATGATAATCATCAAGGGGAGCAACAACCAAAACGGCGTCGCAGAAGAAAGAGTAAGGGTGAAGGAAATAGTTCCGCTTTGAAGAAGAGGAAGCTTAGTGCTGAGCAAGTCAACATGTTGGAGATCAACTTTGGGTGTGAGCACAAGCTTGAGTCTGAAAGGAAGGACCGGCTTGCCTCGGAGTTGGGTTTGGATCCGAGGCAAGTCGCGGTCTGGTTCCAAAACCGTAGGGCTCGTTGGAAGAGCAAGAAGCTCGAGGAAGAGTACTCCAAACTAAGAAATGATCATGAGGGTCTTGTTGTGGAGAAATGTCGTCTTGAAACTGAGGTATGTTTAACTCATGTTATTCATATCTCGCAGTCCTATCATACATATTTTTTGTGTCATATTGTTTTTTCAGCGTTTATATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_52727.p1 GENE.R_Transcript_52727~~R_Transcript_52727.p1 ORF type:complete len:158 (+),score=23.66,Homeobox|PF00046.25|1.6e+04,Homeobox|PF00046.25|1.3e-16 R_Transcript_52727:266-739(+)
MQDQSDLISQLYPGLYTPTMANDNHQGEQQPKRRRRRKSKGEGNSSALKKRKLSAEQVNMLEINFGCEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKSKKLEEEYSKLRNDHEGLVVEKCRLETEVCLTHVIHISQSYHTYFLCHIVFSAFI*

Click here to download the sequence:
Link to NCBI Protein BLAST