Transcript Information: R_Transcript_52868.p1


Annotated TAIR IDAT3G04820.1
Annotated Gene NamePseudouridine synthase family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:1321453-1325949 | Reverse length=715
E-Value4.1e-320
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 110.040347013811
Replicate 26.3072998580335
Replicate 310.092421103779
Condition 2: 8 Hour
Replicate 19.3497428236477
Replicate 26.6575122170686
Replicate 39.0152191599252
Condition 3: 24 Hour
Replicate 113.609167435381
Replicate 210.57121220523
Replicate 312.53648239076


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_52868.p1 GENE.R_Transcript_52868~~R_Transcript_52868.p1 ORF type:complete len:749 (+),score=137.35,TruD|PF01142.14|0.0014,TruD|PF01142.14|1.5e-70,TruD|PF01142.14|0.0055 R_Transcript_52868:145-2247(+)
ATGACCTCCATTACCATCGAAGAAAATCCTAACGAACCTCAAAACTTCATTAAAAAACCTCACAAGAGTATAGAAGAACCAGACGTTGGTATTCTTTGCTACATCTCTAAACTCCCTGGTTTTCGCGGCATTCTTAAACAAAGGTACTCGGATTTTATTGTCAATGAAGTGGATTTGGATGGAAATGTTGTTCACTTAACTTCATTGCAAGTCCCCCCTGAGTTGGTGGAAAAGAAGGAAGAGAAGAAGGTGGCTGAGCAATCGGATAAAAGCTATATGTCGGAAATTGAATCATTTAGGTCGATAGTAGGTGATTCGGATGCTGATCGGTTGAAAGAGTTCATTGAGAAAGTTAATAGTGGTGGTGAAGATCATCTTGCTCCATTACTTCTTTCTCCAAGTTCGGATAAATCCCATCGCACGGCAGTGCACAACTTCTTCAAGGAGAAACTGAAATTCCTGGTCACTGACACAATAGATGGGCCTGATGCCTCGTCGAAGTGCATTCGTGCGAGGCTGAATTCTGGAGGGAATACGAACAGGGGTAGACACTCTCGAAAGCGAAAAGATAGGAATGATAAGCCATTTGATAGAAGAGGTTCAGATAATTGGCCAGAGCATCTTGGCAAGTTCCTTAGGTTTCATCTCTACAAGGAGAATAAGGACACTCAAGAGGCCTTGAGATTGATCGGAAAGATGCTAGGAGTCCAGCCAAGATCATTTGGATTTTCAGGTACGAAGGATAAGCGTTCGGTGTCTACACAAAGGGTAACAATGTTCAAGCAGCGTGCTAGTAGATTAGCTTCACTCAATGAAAGGTTGATTGGTATAAAAGTTGGTAATTTCTGCCATGTTGAAGGAGGACTTCAGCTTGGGCAGCTCCTTGGAAATCGATTCACTATAACGCTGAGAGGAGTTGTTGCTGATTCTGAAGACACCATTAGAGCATCTGCGGATGTCTTAGGAAAGCATGGGTTCATTAATTATTTTGGACTACAGAGGTTTGGAAGTGGTTCAGTACCAACTCACCTTATTGGAGCTGCATTACTTCGTGGAGAGTGGAAAGATGCTGTTGATATGATCCTTGATCCAAGAGAAGGGGAAAGAGATGATATTAGAAAAATTCGTGAAAATTACAAGAAAAGCAATGATATCGAAGGGATGCTGAGGCGACTACCACATCATATGGTTGCTGAGAGGGCTGTTCTGCAGTGCTTAAAGAAATTTCCCGGAAATTACGTGCAAGCATTAAAGGCAATCCCTAGAACATTGAGAATGATGTATGTACACAGTTACCAGAGTTATTTGTGGAACCATGCGGCAAGTATCAGAATGCAAAAGTATGGAGCCGATAGGGTTGTTGTGGGAGATCTTGTATATTGCAAAGAAGAATGCAGTAAGGATGTCATTTCCGGCCACACAGACTGTGAAAATGATATATCTGATGAGGCTGACAATGATAGCAATCTTGAAGAACTTGCTGAAGTTGATCTTCCTGAAGAAAAGAATCTCACAGTCAAGGCTGTGGATGAAGAAGATCTGGTCCATCAAAAGTACACAATAAATGATGTCGTCCTTCCGTTGCCAGGTTCAAGGGCAATGTATCCAGCGAATGATGTTGCAGCTGTTTATCATGATTTGGCTAAGAAGGATAATATCAGCTTGACAGAGAGTGTACACAATGTTAAAGAATTTTCAATAACAAGTATGAGTGGAGGTTATAGACGCGTTTTCCAGAAACCCGGGGATTTTGAATGGGAATTACTGAAGTATACAGATCCTAGTACACCTTTGGCAGATACAGATTTGGATATTCTTGTCAAGTTCCAATCTGCAACGATGAATGAAAAAGAGGATGCAGTCAATGGCAGCAAAGTTACGTCATGTGATTCCGTAAATTTGTCAGAACACTATGATGGGGCGATGTCAGGCGACAGTAAGAGAGAAGGTGCAAGTCAAACCAACAATTTAGAGGCCACACAGACAGCACTCAAGCTTAGTTTTACACTTCCTGCTTCTTGCTATGCTACAATGGCTATAAGGGAGCTTCTCAAAACATCAACATCAGTGGCATTTCATAAAACATTGAATGACCAGATATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_52868.p1 GENE.R_Transcript_52868~~R_Transcript_52868.p1 ORF type:complete len:749 (+),score=137.35,TruD|PF01142.14|0.0014,TruD|PF01142.14|1.5e-70,TruD|PF01142.14|0.0055 R_Transcript_52868:145-2247(+)
MTSITIEENPNEPQNFIKKPHKSIEEPDVGILCYISKLPGFRGILKQRYSDFIVNEVDLDGNVVHLTSLQVPPELVEKKEEKKVAEQSDKSYMSEIESFRSIVGDSDADRLKEFIEKVNSGGEDHLAPLLLSPSSDKSHRTAVHNFFKEKLKFLVTDTIDGPDASSKCIRARLNSGGNTNRGRHSRKRKDRNDKPFDRRGSDNWPEHLGKFLRFHLYKENKDTQEALRLIGKMLGVQPRSFGFSGTKDKRSVSTQRVTMFKQRASRLASLNERLIGIKVGNFCHVEGGLQLGQLLGNRFTITLRGVVADSEDTIRASADVLGKHGFINYFGLQRFGSGSVPTHLIGAALLRGEWKDAVDMILDPREGERDDIRKIRENYKKSNDIEGMLRRLPHHMVAERAVLQCLKKFPGNYVQALKAIPRTLRMMYVHSYQSYLWNHAASIRMQKYGADRVVVGDLVYCKEECSKDVISGHTDCENDISDEADNDSNLEELAEVDLPEEKNLTVKAVDEEDLVHQKYTINDVVLPLPGSRAMYPANDVAAVYHDLAKKDNISLTESVHNVKEFSITSMSGGYRRVFQKPGDFEWELLKYTDPSTPLADTDLDILVKFQSATMNEKEDAVNGSKVTSCDSVNLSEHYDGAMSGDSKREGASQTNNLEATQTALKLSFTLPASCYATMAIRELLKTSTSVAFHKTLNDQI*

Click here to download the sequence:
Link to NCBI Protein BLAST