Transcript Information: R_Transcript_5287.p1


Annotated TAIR IDAT1G20960.1
Annotated Gene NameU5 small nuclear ribonucleoprotein helicase, putative
Annotated Gene Symbol(s)emb1507
Annotation TypeOrtholog
Chromosome Positionchr1:7302591-7309914 | Reverse length=2171
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 119.820134370023
Replicate 210.59455195478
Replicate 314.366668299515
Condition 2: 8 Hour
Replicate 114.884887598785
Replicate 217.679264706392
Replicate 324.943879975582
Condition 3: 24 Hour
Replicate 122.536176240969
Replicate 216.252842295398
Replicate 321.676666211955


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_5287.p1 GENE.R_Transcript_5287~~R_Transcript_5287.p1 ORF type:complete len:2178 (+),score=568.87,Sec63|PF02889.12|1.8e-113,Sec63|PF02889.12|1.2e-99,DEAD|PF00270.25|1.8e-28,DEAD|PF00270.25|1.8e-24,DEAD|PF00270.25|2.1e+03,ResIII|PF04851.11|1e-12,ResIII|PF04851.11|1.5e-10,Helicase_C|PF00271.27|2.6e+03,Helicase_C|PF00271.27|4e-09,Helicase_C|PF00271.27|7.8,AAA_22|PF13401.2|0.044,AAA_22|PF13401.2|0.0018 R_Transcript_5287:162-6695(+)
ATGTCGAATCTAGGCGGTGGTGCTGAGGCACACGCTAGATTTAAGCAGTATGAGTACAGGGCAAACTCGAGTTTGGTCCTTACGACTGATTCGAGGCCTAGGGATACCCACGAGCCCACTGGTGAGCCCGAGTCGTTGCACGGTAAAATCGACCCCAAGTCGTTTGGGGACCGTGCTGCTCGAGGCCGGCCACCTGAGTTGGATGAGAAGCTCAAGAAGTCTTCGAAGAAGAAGAAGGAGAGGGAGTTGCTTGCGGAGCCTGGCCCTACTCGACAGACCAAGAAACGCCGTCTTCAGGAGGAGAGTGTATTGACTGTGACTGATGAGGGTGTTTACCAGCCCAAGACGAAGGAGACCCAGGCTGCTTATGAGGCTATGCTTAATGTGATTCAACTGCAGCTTGGTGGGCAGCCCCTTAATATTGTTAGTGCTGCTGCTGATGAGATTCTTGCGGTTCTGAAGAATGATGCTATTAAGAACCCTGATAAGAAGAAGGAGATTGAGAAGTTGTTGAATCCGATTTCGAGCAGTGTGTTTGATAATTTGGTTAGTATTGGGAAGATGATAACAGATTATCAAGAAGGGGGCGAGGGGGCTCCGTTGGCTAATGGGGATGGTGCTCTTGATGATGAGATGGGTGTTGCTGTTGAGTTTGAGGAGAACGAGGATGATGAGGATGAGAGTGATCTTGATTTGGTGCAAGAGGATGAGGAGGAAGACGAGGATCTGGCTGAGCCTGGTAGGTCTGGGGCTATGCAGATGGGTGGGATTGATGACGAGGATATGAAGGATGCTGATGAGGGTATGAATTTGAATGTTCAAGATATTGATGCTTATTGGCTTCAGAGAAAGATATCTCAAGCTTATGATCAGCAGATTGATCCACAACAGTGCCAGAAGCTTGCTGAAGAGGTTCTTAAGATACTTGCTGAAGGGGATGACAGGGAGGTTGAAACTAAGCTCTTGATGCACCTTGATTTTGATAAGTTTAGCCTCATTAAGTTCCTTCTGCGAAATAGGCGGAAGGTTGTGTGGTGTACCCGCCTGGCACGAGCTGAAGACCAGGAGGAACGGAAAAAGATTGAAGAAGAAATGATGGAATCTGGGTCTGATTTGGCTGCTATTCTGGAGCAGTTGCATGCCACCAGGGCTACTGCCAAGGAGAGGCAGAAGAACTTGGAGAAGAGTATAAGAGAGGAGGCTCGTCGGTTAAAGGACGAGAGTGTTGCGGATGGGGACAGTGGTCGAAGAGGATTAGCCGAGAGAGATGGTGAGAGTGGTTGGTTGAATGGGCAGCGACAGTTGCTTGATCTGGAGAGCATTGCATTTCAACAGGGTGGCCGATTTATGGCAAATAAGAAGACTATATTGCCCGATGGATCCTACAGGCATCAAGCTAAAGGATATGAGGAGGTTCACATTCCTGCATTGAAAGCAAAAGCACTTCAACCGGGTGAAGAACTTGTGAAGATATCATCAATGCCAGAGTGGGCACAACCAGCTTTCAAAGGGATGACGCAGTTGAATAGGGTGCAGAGTAAAGTTTATGAGACTGCACTCTTTTCAGCTGACAACATTCTGCTTTGTGCCCCTACTGGTGCAGGGAAGACTAATGTCGCTGTGCTTACCATATTACAGCAGATTGCTTTGAATAGGGCACCAGATGGGTCATTCAACCACAGCAGTTATAAAATTGTGTACGTTGCCCCTATGAAGGCCCTTGTGGCAGAAGTGGTTGGTAACTTGTCTAACCGTCTGCAGCATTATGGTGTGAATGTGAAGGAGTTGAGTGGAGATCAGTCACTGACCAAGCAGCAGATAGATGAAACTCAAATAATTGTCACAACCCCAGAAAAGTGGGATATCATAACAAGGAAATCAGGTGATCGAACATACACACAGCTTGTAAAACTTCTTATCATTGATGAGATACATTTACTTCATGACAACAGAGGCCCTGTACTTGAAAGCATTGTTGCGAGGACCGTTAGACAGATCGAAACAACAAAAGAAAATATCCGTTTAGTTGGCCTATCTGCTACTCTACCAAATTATGAGGATGTGGCATTATTCCTGAGGGTTGACTTGGATAAGGGGCTATTCTACTTTGACAACAGCTATAGGCCTTGTCCCCTTGCACAGCAGTACATTGGAATTAACATAAAGAAGCCCCTGCAGAGGTTCCAGCTGATGAATGATATTTGTTATGAGAAGGTGATGGCTGTGGCAGGAAAGCACCAGGTTCTTGTTTTTGTCCACTCAAGGAAAGAGACAGCAAAGACTGCTCGAGCAATTAGGGATACGGCGTTAGCTAATGACACGCTTGGCAGATTTTTGAAAGAAGATAGTGCAAGTCGTGAGATTCTTCATACTCATACTGATTTGGTGAAGAGCAATGACCTGAAAGACCTCCTACCTTATGGTTTTGCTATTCATCATGCTGGGATGGCAAGGGCTGACCGCCAGCTTGTTGAGGATCTCTTTGCTGATGGTCATGTGCAAGTCTTGGTTTCGACAGCAACTCTAGCTTGGGGTGTCAACCTTCCTGCTCATACAGTAATTATCAAGGGGACTCAGATTTATAATCCAGAAAAAGGAGCCTGGACCGAATTGAGTCCTCTGGATGTTATGCAGATGCTCGGTCGTGCTGGTAGACCGCAGTATGATACTTATGGAGAGGGAATAATCATTACTGGCCATACTGAATTGCAGTTTTACCTTTCTTTGATGAACCAACAGCTTCCTATTGAAAGCCAGTTTATATCAAGGTTGGCGGATCAGTTGAATGCGGAAATTGTCCTTGGGACTGTGCAAAATGCTAGAGAAGCCTGCAATTGGATTGGTTACACTTATCTTTACATCAGGATGTTACGTAATCCTACTCTATATGGCTTAGCTCCTGATGCACTGGACAAGGACATTACACTGGAGGAGAGAAGAGCAGATCTGGTGCATTCTGCAGCAACTATTTTGGACAAGAATAACTTGGTAAAATATGACCGGAAGAGTGGATACTTCCAGGTCACTGACTTGGGTCGGATCGCAAGTTACTATTACATAACACATGGGACGATATCCACATATAATGAGCACTTGAAGCCAACTATGGGTGACATAGAGCTTTGCCGGTTATTCTCCCTTAGTGAGGAATTTAAATATGTGACTGTCAGGCAAGATGAGAAGATGGAACTGGCCAAGCTTTTGGACCGTGTTCCCATCCCTATCAAAGAGAGCCTTGAAGAGCCCAGTGCTAAGATTAATGTTCTACTTCAAGCATACATTTCTCAGTTGAAGCTTGAAGGCCTATCACTGACCTCCGACATGGTTTATATAACACAGAGTGCAGCTCGTCTTTTACGAGCACTTTTTGAAATAGTGTTGAAAAGAGGATGGGCTCAATTGGCTGAGAAAGCATTGAATCTGTGCAAAATGGTTCAGAAGAGAATGTGGAGTGTGCAGACACCACTGCGTCAATTTGCTGGGATTCCTAAAGATATCCTGAATAAATTGGAGAGAAAGGATCTAGCTTGGGAAAGGTACTATGATCTTTCTCCACAAGAGCTTGGGGAGCTCATTCGGTACCCCAAGATGGGAAGAACTCTTCATAAATTCATTCACCAGTTCCCAAAGCTCAACCTTGCTGCTCATGTCCAGCCGATTACCCGTTCAGTTTTGGGAGTTGAGCTTACCATTACACCTGATTTCCAGTGGGATGACAAGGTTCATGGTTATGTGGAACCTTTCTGGGTTGTTGTGGAGGATAATGATGGTGAATACATACTTCATCATGAATACTTTATGCTGAAAAAGCAGTATATTGATGAGGACCATACACTGAATTTTACTGTACCAATATCTGAGCCTCTGCCCCCTCAGTATTTCATTCGTGTTGTCTCAGATAGGTGGTTAGGATCGCAGACTGTTTTACCTGTTTCATTCAGGCACCTTATTTTGCCTGAGAAATATCCTCCCCCTACTGAGCTATTGGATTTGCAACCACTGCCTGTGACTGCATTAAGAAATCCAAAATATGAAGCTCTTTATCAGGAATTTAGGCACTTCAATCCTGTTCAAACTCAAGTCTTTAATGTTTTGTACAATTCAGATGACAATGTCTTGGTTGCAGCACCGACTGGTAGTGGGAAGACCATATGTGCTGAGTTTGCTATTCTGCGGAATCATCAAAATCTTAAAGGCCCTGAGAGTGTAATGCGTGTTGTCTATATAGCTCCGATTGAAGCTCTGGCAAAAGAAAGGTACCGTGATTGGGAGAGAAAGTTTGCAAAGGTTCTTGGTTTGCAGGTGGTGGAACTAACTGGTGAGACAGCAACTGACTTAAAATTGCTGGAGAAGGGGCAGATAATTATAAGTACCCCTGAGAAATGGGATGCGTTGTCTCGTCGCTGGAAACAGAGGAAAAATGTTCAGCAAGTTAGCCTTTTCATCATTGATGAACTCCACCTGATTGGTGGTCAAGGTGGTCCTGTGTTGGAGGTGATTGTCTCAAGGATGAGATACATAGCAAGTCAAGTGGAGAACAAGATTCGCATTGTTGCTTTGTCGACTTCTCTTGCTAATGCCAAGGATCTTGGTGAATGGATAGGTGCAAGCTCAAATCTATTCAATTTCCCACCAGGGGTTCGTCCAGTTCCTTTGGAGATCCACATACAGGGTGTAGATATTGCTAATTTTGAGGCAAGAATGCAGGCTATGACGAAACCAACATACACAGCTATTGTTCAACATGCAAAGAATGGGAAACCTGCTATTGTGTATGTTCCTACACGGAAGCATGCCTCTCTAACTGCTGTGGATTTGGTTACATATGCTAGTGGAGACAGTGGGGAGAAGCCTATAGTTTTGCTGCATTCATCAGAGGAGATGGAACCCTTTACTGATAAGATCAAGGATTCAACTCTCAAGACGACTCTCGGGTATGGTGTTGGCTTTTTGCATGAAGGTTTGGTTAGCACTGATCAAGAGATTGTTTCTCAGCTTTTTGAAGCTGGATGGATCCAAGTTTGTGTTATGACCAGTTCCATGTGCTGGGGTGTGCCTCTGTTGGCACATTTGGTGGTGGTTATGGGAACTCAGTACTATGATGGGCGGGAGAATGCTCATACGGATTATCCTGTTACTGATCTGTTGCAGATGATGGGCCATGCTAGTCGTCCTTTGGTAGATAACTCTGGGAAGTGTGTCATTCTTTGCCATGCACCACGTAAGGAATACTACAAGAAGTTTTTGTATGAAGCATTCCCGGTGGAGAGCCATTTGCAGCACTTCTTACATGATAATATTAATGCAGAAGTAGTGGTTGGAGTTATTGAGAATAAGCAGGATGCTGTAGACTATCTCACGTGGACATTCATGTATAGGAGGCTTACTCAGAATCCCAACTATTATAATCTTCAGGGTGTCAGTCATAGGCATCTTTCAGATTACCTGTCTGAGCTTGTGGAGAACACGCTAAGTGATTTGGAAGCGAGTAAATGTGTGGCAATTGAAGATGATACTGATCTTTCTCCTTTGAACCTTGGCATGATAGCATCATATTACTACATCAGTTACACAACAATTGAACGTTTTAGTTCTTCCTTGACATCTAAGACGAAATTGAAGGGTCTGTTGGAGATACTGGCCTCAGCCTCTGAGTATTCTCAACTTCCTGTGCGGCCTGGGGAAGAGGAGTTGATTCGTAAGTTGGTTCATCATCAGAGATTCTCGTTTGAGAATCCCAAGTACACAGATCCACATGTAAAAGCAAATGTACTGCTGCAAGCTCACTTTTCGAGGCATCCAGTTGGTGGCAACTTGGCTGCTGACCAACGTGAAGTGCTCCTCTCTGCTGGTAGATTGCTTCAAGCTATGGTTGATGTTATTTCCAGCAGTGGGTGGCTAAGTCTTGCTCTTCTTGCAATGGAAGTAAGCCAGATGGTGACACAAGGTATGTGGGAGCGTGATTCCATGCTTTTGCAGCTGCCACATTTCACAAAGGAATTGGCTAAGAGATGCCAAGAGAACCCTGGGAAGCCAATTGAGACAGTGTTTGACCTTGTCGAAATGGAGGATGATGAGCGGAAAGAGCTTCTCCAGATGTCTGATTCTCATTTGCTTGATATTGCACGCTTCTGCAACCGTTTTCCAAACATTGATATGACTTATGATGTGGTGGATGCTGATGATGTGAGGGCTGGAGAAGATGTGACCATGGTGGTTACCCTTGAACGGGACCTCGAAGGGAGGTCAGAGGTGGGGCCTGTCGATGGTCCTAGATATCCGAAAGCAAAAGAAGAGGGGTGGTGGCTGGTAGTGGGTGACACAAAGAGCAACCAGTTGCTGGCTATCAAGAGGGTTGCCTTGCAGAAGAAATCCAAAGTGAAGCTTGAATTTAATGCACCTGTTGAAGCTGGAAAGAAGACATATACTCTGTATTTCATGTGTGACTCTTACTTGGGATGCGACCAAGAGTACAATTTCACTGTTGATGTTAAAGATGAAGCAGCTGGTGGAGATGATAGCGGGAGGGAGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_5287.p1 GENE.R_Transcript_5287~~R_Transcript_5287.p1 ORF type:complete len:2178 (+),score=568.87,Sec63|PF02889.12|1.8e-113,Sec63|PF02889.12|1.2e-99,DEAD|PF00270.25|1.8e-28,DEAD|PF00270.25|1.8e-24,DEAD|PF00270.25|2.1e+03,ResIII|PF04851.11|1e-12,ResIII|PF04851.11|1.5e-10,Helicase_C|PF00271.27|2.6e+03,Helicase_C|PF00271.27|4e-09,Helicase_C|PF00271.27|7.8,AAA_22|PF13401.2|0.044,AAA_22|PF13401.2|0.0018 R_Transcript_5287:162-6695(+)
MSNLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLHGKIDPKSFGDRAARGRPPELDEKLKKSSKKKKERELLAEPGPTRQTKKRRLQEESVLTVTDEGVYQPKTKETQAAYEAMLNVIQLQLGGQPLNIVSAAADEILAVLKNDAIKNPDKKKEIEKLLNPISSSVFDNLVSIGKMITDYQEGGEGAPLANGDGALDDEMGVAVEFEENEDDEDESDLDLVQEDEEEDEDLAEPGRSGAMQMGGIDDEDMKDADEGMNLNVQDIDAYWLQRKISQAYDQQIDPQQCQKLAEEVLKILAEGDDREVETKLLMHLDFDKFSLIKFLLRNRRKVVWCTRLARAEDQEERKKIEEEMMESGSDLAAILEQLHATRATAKERQKNLEKSIREEARRLKDESVADGDSGRRGLAERDGESGWLNGQRQLLDLESIAFQQGGRFMANKKTILPDGSYRHQAKGYEEVHIPALKAKALQPGEELVKISSMPEWAQPAFKGMTQLNRVQSKVYETALFSADNILLCAPTGAGKTNVAVLTILQQIALNRAPDGSFNHSSYKIVYVAPMKALVAEVVGNLSNRLQHYGVNVKELSGDQSLTKQQIDETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKENIRLVGLSATLPNYEDVALFLRVDLDKGLFYFDNSYRPCPLAQQYIGINIKKPLQRFQLMNDICYEKVMAVAGKHQVLVFVHSRKETAKTARAIRDTALANDTLGRFLKEDSASREILHTHTDLVKSNDLKDLLPYGFAIHHAGMARADRQLVEDLFADGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDVMQMLGRAGRPQYDTYGEGIIITGHTELQFYLSLMNQQLPIESQFISRLADQLNAEIVLGTVQNAREACNWIGYTYLYIRMLRNPTLYGLAPDALDKDITLEERRADLVHSAATILDKNNLVKYDRKSGYFQVTDLGRIASYYYITHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPIKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVYITQSAARLLRALFEIVLKRGWAQLAEKALNLCKMVQKRMWSVQTPLRQFAGIPKDILNKLERKDLAWERYYDLSPQELGELIRYPKMGRTLHKFIHQFPKLNLAAHVQPITRSVLGVELTITPDFQWDDKVHGYVEPFWVVVEDNDGEYILHHEYFMLKKQYIDEDHTLNFTVPISEPLPPQYFIRVVSDRWLGSQTVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPKYEALYQEFRHFNPVQTQVFNVLYNSDDNVLVAAPTGSGKTICAEFAILRNHQNLKGPESVMRVVYIAPIEALAKERYRDWERKFAKVLGLQVVELTGETATDLKLLEKGQIIISTPEKWDALSRRWKQRKNVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSNLFNFPPGVRPVPLEIHIQGVDIANFEARMQAMTKPTYTAIVQHAKNGKPAIVYVPTRKHASLTAVDLVTYASGDSGEKPIVLLHSSEEMEPFTDKIKDSTLKTTLGYGVGFLHEGLVSTDQEIVSQLFEAGWIQVCVMTSSMCWGVPLLAHLVVVMGTQYYDGRENAHTDYPVTDLLQMMGHASRPLVDNSGKCVILCHAPRKEYYKKFLYEAFPVESHLQHFLHDNINAEVVVGVIENKQDAVDYLTWTFMYRRLTQNPNYYNLQGVSHRHLSDYLSELVENTLSDLEASKCVAIEDDTDLSPLNLGMIASYYYISYTTIERFSSSLTSKTKLKGLLEILASASEYSQLPVRPGEEELIRKLVHHQRFSFENPKYTDPHVKANVLLQAHFSRHPVGGNLAADQREVLLSAGRLLQAMVDVISSSGWLSLALLAMEVSQMVTQGMWERDSMLLQLPHFTKELAKRCQENPGKPIETVFDLVEMEDDERKELLQMSDSHLLDIARFCNRFPNIDMTYDVVDADDVRAGEDVTMVVTLERDLEGRSEVGPVDGPRYPKAKEEGWWLVVGDTKSNQLLAIKRVALQKKSKVKLEFNAPVEAGKKTYTLYFMCDSYLGCDQEYNFTVDVKDEAAGGDDSGRE*

Click here to download the sequence:
Link to NCBI Protein BLAST