Transcript Information: R_Transcript_52893.p1


Annotated TAIR IDAT4G19610.1
Annotated Gene Namenucleotide binding;nucleic acid binding;RNA binding
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr4:10677482-10681623 | Forward length=816
E-Value2.1E-289
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 122.568498164761
Replicate 220.261809810662
Replicate 323.321214150968
Condition 2: 8 Hour
Replicate 120.971006167122
Replicate 225.031240468782
Replicate 326.055991119735
Condition 3: 24 Hour
Replicate 125.47790428165
Replicate 221.124095969986
Replicate 325.821682971997


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_52893.p1 GENE.R_Transcript_52893~~R_Transcript_52893.p1 ORF type:complete len:829 (+),score=197.07,RRM_1|PF00076.18|1e-15,RRM_1|PF00076.18|2.8e-21,RRM_1|PF00076.18|5.7e-08,RRM_1|PF00076.18|3e-09,RRM_1|PF00076.18|1.2e-18,RRM_6|PF14259.2|7.6e-11,RRM_6|PF14259.2|7.7e-14,RRM_6|PF14259.2|5.2e-08,RRM_6|PF14259.2|9.1e-10,RRM_6|PF14259.2|1.9e-12,RRM_5|PF13893.2|0.0002,RRM_5|PF13893.2|5.6e-09,RRM_5|PF13893.2|0.2,RRM_5|PF13893.2|2.7e+02,RRM_5|PF13893.2|1.7e-10,RRM_occluded|PF16842.1|30,RRM_occluded|PF16842.1|0.52,RRM_occluded|PF16842.1|5.6,RRM_occluded|PF16842.1|1.8e+03,RRM_occluded|PF16842.1|3e+02,Nup35_RRM_2|PF14605.2|0.066,Nup35_RRM_2|PF14605.2|19,Nup35_RRM_2|PF14605.2|2.6e+02,Nup35_RRM_2|PF14605.2|49 R_Transcript_52893:385-2871(+)
ATGCGGTACTTCAGGTCTCGAATTTATGTGAAAGATTTGCCAAAACATGCAACGGAAGATCGTCTAAGGGAGTTCTTTTCAGAGAAAGGCGAGATTACTGACTGCAAGCTCATTCGCACCAGAGATGGCAAGAGCAGGCAGTTTGCGTTTATTGGGTACCGGACCGAGCAAGAAGCGGAAGAGGCTATTAGATACTTCAACAAGTCGTATTTGGACACCTCCAGAATTAGTTGTGAGTTTGCTCTGAAACAAGGGGATCCAAATATTCCCTGTCCTCAGAGTTGGTATTCTAAGAAGAAAGAAGAGAAGACTCAAGGGCAAAACCAGAACCAAGTTTCTGACGGCAAAGATAAAAATGAGAAGAGTGCAAACATAAGTCAGGAGAATGGTGATCCCAAATTTGTAGAGTTTTTTCAAGTTATGCAGCCACGAAGCAAATCAAAGTTGTGGGAAAATGATCTAGTAGCTCCCACTCTTGAGCATATAGCTGCAGACAGTGAGGAGTCCACTCAGTTACAGCAAGAAGAGAAGGGGTCAATGAAAAAGCTTAACATGGCTAAGACTGCTCAGGATGATGGAATGCATGATGAAAACACTGACGGACCACCAAAACTTGCCCATGATTTAGAAGTCTCGGACATGGAATACTTTCAACATCGAGTTAAAAAGGAATGGTCTGATTCAGAAAGTGATAGTGATGATGAAAATGGAATTGATATGGATCAGCATGATGATAACAGTGGTCCTGAGGGTAATCAAAAAGAGCTGGGTGTTCAGAATTTCTCTGCTTCTGTGAGGCAGAACACGCTAAAAGGCATTGGTGTGTTTGAAGAATCTGGTGGTGAATTTGTGAGCTCTGTAAATCTATCTAGTCCACAAGATGCAATGCTTCAGCCTGGTCGGCTTTATGTCCGCAATCTTCCCTATGCTGCAACTGAGGATGAGCTGGCAGATCTCTTCAGCAAATTTGGGAACATAGCAGATGTCCATCTTGTCATTGATAAAGAGACAAAACAGTCTAAAGGTTTTGCTTATGTTCTTTATAGTGCTCCAGAAGCTGCTTCTAGGGCCTTAGAAGAATTGGATCATTCAACCTTTCAAGGTAGATTATTGCATGTCATGCCAGCGAAAGTAAAAGATGCTTTTCAAGATCAAGAAGCCCATTTATCTGTGGGCAAAGCTAAAACATTTAAGCAGCGGAGGGAGGAAGAGAGAAAGACATCAGAAGCAGCTGGAAATACTCGAGCATTGAACACTTTGTATATGCGTGCTGACACTGTTGTTGAAAATATTGCTAGGAAATATGGGGTTAGTAAAAGTGAACTGCTAGATCGTGAAGCTGATGATCTTGCTGTACGCATCGCTCTTGGAGAAACTCAAATTATTGCAGAAACCAAGAAGGCTCTAGCAAATGCTGGAATTAATGTTACATCCTTGGAGGAATTTGCATCTGGAAAAACTGAAGGGGTAAAAAGAAGTAACCATGTGTTACTGGTCAAGAACTTGCCTTACAGTTCAACAGAAGGTGAACTCTCAAATATGTTCGGCAAATTCGGGAGTATTGACAAAATTATTCTTCCTCCAACGAGGACATTGGCCTTGGTAATCTTTCTTGAACCAGCTGAAGCCCGTGCTGCTTTTAGAGGCCTGGCTTACAAACGTTACAAGGATGCTCCTTTGTATTTGGAATGGGCCCCCAGCAATATCCTAAGTCCAGATGCAGCGCCTGACAACAACTCAAAGAATAACATGGTTGGTGACCAAGAAGCCAAGAAGTTTATTCTGGAGCAGGCAGTCAAAGGGATATCTCAAGCTGAAATTGATCCTGATAGAGTTGAGTCACGATCACTTTACATCAAGAACTTGTATTTTAGGACATCTGATGAAAGGTTAAAGAAGCATCTGACTGAAAACATGAAAGAAGGAAAGGTTCTGAGCGTCAGGATAAAGAAGCACTTGAAAAATGGGAAGAATCTATCAATGGGTTTTGGATTTGTGGAATTTGATTCTATGGAGACAGCATCAAATGTTTGCCGGGATTTACAGGGTACTGTTTTAGATGGGCATGCGTTAATTATGCAACTTTGCCACATCAAGAATGATGAAAATGTTCTCAAGAAAGCTGAGAACGATAAAAGTTCCACAAAATTAATAGTAAGAAATGTCGCATTTGAGGCAACGGAGAAGGATCTTAGGCAGCTGTTCAACCCATTTGGTCAGATAAAAAGTTTAAGGCTCCCAATGAAGCTTGGGAAACACAGAGGTTTTGCATTTGTGGAATTTGTCACTAAACAAGAAGCGCAAAATGCCCTTAAAGCTCTGTCAAGTACCCATTTGTATGGGCGACACTTGGTTCTAGAACGAGCGAAGGAGGGTGAAACGTTAGAAGAACTAAGAAAACGAACAGCTGCTCAATTTGCCACTGACCAAGACGATTTCACAAATCCTACGAGAATTTCGAAGAAAAGAAAGGTCACAACTTATTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_52893.p1 GENE.R_Transcript_52893~~R_Transcript_52893.p1 ORF type:complete len:829 (+),score=197.07,RRM_1|PF00076.18|1e-15,RRM_1|PF00076.18|2.8e-21,RRM_1|PF00076.18|5.7e-08,RRM_1|PF00076.18|3e-09,RRM_1|PF00076.18|1.2e-18,RRM_6|PF14259.2|7.6e-11,RRM_6|PF14259.2|7.7e-14,RRM_6|PF14259.2|5.2e-08,RRM_6|PF14259.2|9.1e-10,RRM_6|PF14259.2|1.9e-12,RRM_5|PF13893.2|0.0002,RRM_5|PF13893.2|5.6e-09,RRM_5|PF13893.2|0.2,RRM_5|PF13893.2|2.7e+02,RRM_5|PF13893.2|1.7e-10,RRM_occluded|PF16842.1|30,RRM_occluded|PF16842.1|0.52,RRM_occluded|PF16842.1|5.6,RRM_occluded|PF16842.1|1.8e+03,RRM_occluded|PF16842.1|3e+02,Nup35_RRM_2|PF14605.2|0.066,Nup35_RRM_2|PF14605.2|19,Nup35_RRM_2|PF14605.2|2.6e+02,Nup35_RRM_2|PF14605.2|49 R_Transcript_52893:385-2871(+)
MRYFRSRIYVKDLPKHATEDRLREFFSEKGEITDCKLIRTRDGKSRQFAFIGYRTEQEAEEAIRYFNKSYLDTSRISCEFALKQGDPNIPCPQSWYSKKKEEKTQGQNQNQVSDGKDKNEKSANISQENGDPKFVEFFQVMQPRSKSKLWENDLVAPTLEHIAADSEESTQLQQEEKGSMKKLNMAKTAQDDGMHDENTDGPPKLAHDLEVSDMEYFQHRVKKEWSDSESDSDDENGIDMDQHDDNSGPEGNQKELGVQNFSASVRQNTLKGIGVFEESGGEFVSSVNLSSPQDAMLQPGRLYVRNLPYAATEDELADLFSKFGNIADVHLVIDKETKQSKGFAYVLYSAPEAASRALEELDHSTFQGRLLHVMPAKVKDAFQDQEAHLSVGKAKTFKQRREEERKTSEAAGNTRALNTLYMRADTVVENIARKYGVSKSELLDREADDLAVRIALGETQIIAETKKALANAGINVTSLEEFASGKTEGVKRSNHVLLVKNLPYSSTEGELSNMFGKFGSIDKIILPPTRTLALVIFLEPAEARAAFRGLAYKRYKDAPLYLEWAPSNILSPDAAPDNNSKNNMVGDQEAKKFILEQAVKGISQAEIDPDRVESRSLYIKNLYFRTSDERLKKHLTENMKEGKVLSVRIKKHLKNGKNLSMGFGFVEFDSMETASNVCRDLQGTVLDGHALIMQLCHIKNDENVLKKAENDKSSTKLIVRNVAFEATEKDLRQLFNPFGQIKSLRLPMKLGKHRGFAFVEFVTKQEAQNALKALSSTHLYGRHLVLERAKEGETLEELRKRTAAQFATDQDDFTNPTRISKKRKVTTY*

Click here to download the sequence:
Link to NCBI Protein BLAST