Transcript Information: R_Transcript_52901.p1


Annotated TAIR IDAT4G19610.1
Annotated Gene Namenucleotide binding;nucleic acid binding;RNA binding
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr4:10677482-10681623 | Forward length=816
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 122.138931960894
Replicate 216.986058122674
Replicate 319.36761877047
Condition 2: 8 Hour
Replicate 115.102595533155
Replicate 217.192308179598
Replicate 320.779398532584
Condition 3: 24 Hour
Replicate 119.299081258326
Replicate 217.601277168149
Replicate 319.145084756544


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_52901.p1 GENE.R_Transcript_52901~~R_Transcript_52901.p1 ORF type:complete len:822 (+),score=189.25,RRM_1|PF00076.18|5.5e-11,RRM_1|PF00076.18|9.3e-20,RRM_1|PF00076.18|7.4e-06,RRM_1|PF00076.18|1.6e-08,RRM_1|PF00076.18|9.8e-18,RRM_6|PF14259.2|7.9e-07,RRM_6|PF14259.2|1.6e-14,RRM_6|PF14259.2|6.7e-07,RRM_6|PF14259.2|8.5e-05,RRM_6|PF14259.2|1.3e-08,RRM_5|PF13893.2|0.57,RRM_5|PF13893.2|6.3e+03,RRM_5|PF13893.2|9.8e-09,RRM_5|PF13893.2|0.0043,RRM_5|PF13893.2|44,RRM_5|PF13893.2|1.2e-09,RRM_occluded|PF16842.1|44,RRM_occluded|PF16842.1|0.049,RRM_occluded|PF16842.1|70,RRM_occluded|PF16842.1|1.3e+03,RRM_occluded|PF16842.1|1.3e+03 R_Transcript_52901:392-2857(+)
ATGGCTGTCTCTAATGATAATAATAATATAAGCAAGAAAAGCTCTCGAATTTGTGTTAAAAATTTGCCACAACGTCTAACGCTGGATGATCTTAAGCAATTCTTTTCTCAGAAGGGTGAGCTCACTGATGCTAAGCTCATTCTTAACAAGGATGGGAAAAGTAGAGTTGCTTACATTGGGTACCGCACAGAGCAAGAAGCTGAAGAGGCTATCAAATATTTCAACCGGTCTTATTTGAAATCGTCAAGCATCACTTGTGAGTTTAGTTTAAGTTATGGGGATCCAAACATTCCTCGTCCTTGGGGCCAACGTTCTAAGGAGGGCAATAAACTGGCTGGACGGAAAAGGTCATTTGCTGGCAGTGGAGCTAACATAGGCAAGAATACTCCACTTAAATGTAATGAATCCGATGATCCCAAGTTTCGAGAGTTTTACCATGTTGTGCAGCCACGAAGCAAAACAAAATTTTGGGCAGATGATGTAATGCAACCCACCTTCAATCAAGATTGCCAAGTCAATGAGACTGTAAGGAAAAAACAAAAGAAGTCTCACTTTAATCAAGATTGCCAAGTCAATGAGACTGTAAGAAAAAAACCAAAGAAGTGCATAAGTGAGTTCAGTTTTAATAAAACTGTTCCAGAGGAGAATTGGATGGATGATGGAAGATCAGCACAGTTGCAGAACACTGCTCGTGACTATATTCTCACAGATCAAAAGTATTTTGAAAGTAAAATTCGAATGGACTGGTCAGATTCAGAAATTGATATTGATGAAAATGGGATTGATTTCAGTCAGGATCATGGTGGTTTGTGTTATGAAGAAACAAACTATAGGAACCTGTGTTGCAGCTTGAAACATGGAAATAAAGTGCTTCAATCCAGTCGTCTCTATGTCCACAATATTGACTATGCTACAACTGAGGATGAATTGGCAGGGTTCTTCAGTGAATTTGGAGATGTCAAAAAGGTTCATCTAGTTACTGATAAAGAGACTAAACGGTCCAAAGGTTTTGGCTATGTTTTCTATAGCACTCCAGAAGAAGCTGCGAGAGCTTTGGAAAAATTGGACCATCCTATTTTCCAAGGGAGAGTATTGCATGTAGTTCCTGCAGAAACAAGACATGATTTGGAAAAATCTGTTTCTGAAGGCAAAGGCAAAACATACAAGCAGCAGAGGGTGGAACAGAGAAAGACATTAGAATCCAGTGGCCATACTCAAGCATGGAACAGTTTGCATATGCGTTCTGACACTGTCGTTGAATACATTGCTAGGAAATACGGGGTCAGTAAAAGCAACTTATTAAGTTGTGAAGCTGATGATCTTGCTGTTCGTTTTGCTCTTTGGGAAACTCAAATCATAGCAGATACTTTGAAAGCTCTAACAAATGCGGGAGTTAATGTGGCTTCCTTGGAGGCATTCAGTTCTGGAAAATCTGAAGGTGGAAAGAGAAGCATCCATATATTACTGGTCAAGAATTTGCCTTTCAGCTCGAGCAAAGTTGATCTCCTCAAGATGTTTGGTAGATTTGGGAGTATTGAAAAAATTATCCTTCCCCCAACAAAAACATTAGCCTTGGTTTTCTTTCTTGAGCCAGCTGAAGCTCGTGTAGCATTTGATTGCTTGCGCTACAAGCGTTACAGAGATGCTTTGTTGTATTTGGAGTGGGCTCCGAGCACAATTCTTAGTCAAGATCCAACACCTAATGGTGATTCAAAGAGTACTATGGTAGTTGGGAGCCAAGAAGTTACAAAGGGATCACTAGAGCAAATTATGCAGATATCCGAAGCTGAAATGGATCCTGAAATAGCTGAGTCACGGACAGTTTATGTCAAAAACCTCAATTTCAAGACAACGGATGAGAGTTTTGGGAAACACATCCGGGAGAACATGAAAGAAGGGAAGCTTTTGAGCAGCAGGATTGTGAAGCACTTGGAAATGGGAAAGTATTTTTCAAGTGGCTATGCATTTGTGGAATTTGATTCTATGGAGACAGCAAATTATATTTGCAAGGCTTTGCAGGGAACTGTTTTGGATGGGCATGCCTTAAGCTTGCAACTTCATCATCCCAAGGAGGATAAGAGAGTTCTTAAGAAGGCTGAGGATGATCGAAGTTCAACAAAATTGAAGGTTGGAAATGTAGCATTTGAGGCAACGAAGAAGGATCTGAGACAACTCTTTAGTCCGTTTGGTCAGGTTAAAAGCTTGAGGCTTCCCAAGGGGTTGGAAAAACACAGAGGCTTTGCATTCGTTGAATATGTCACCAAACAAGAAGCACACAACGCTCTCAAAGCTCTTTCGAGTACCCATTTATATGGGCGGCGCTTGGTGTTAGAAAGGGCAAAAGAAGGTGAGACTTTGGAAGAACAAAGAGCAAGAACAGCTGCTCAGTTTGCTGGTGAAGGGAGCAGGATCGAGAAGCCAATGGAAGTTACAAGAGAAAGAAAGATTAGATCTCTTCTAGTTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_52901.p1 GENE.R_Transcript_52901~~R_Transcript_52901.p1 ORF type:complete len:822 (+),score=189.25,RRM_1|PF00076.18|5.5e-11,RRM_1|PF00076.18|9.3e-20,RRM_1|PF00076.18|7.4e-06,RRM_1|PF00076.18|1.6e-08,RRM_1|PF00076.18|9.8e-18,RRM_6|PF14259.2|7.9e-07,RRM_6|PF14259.2|1.6e-14,RRM_6|PF14259.2|6.7e-07,RRM_6|PF14259.2|8.5e-05,RRM_6|PF14259.2|1.3e-08,RRM_5|PF13893.2|0.57,RRM_5|PF13893.2|6.3e+03,RRM_5|PF13893.2|9.8e-09,RRM_5|PF13893.2|0.0043,RRM_5|PF13893.2|44,RRM_5|PF13893.2|1.2e-09,RRM_occluded|PF16842.1|44,RRM_occluded|PF16842.1|0.049,RRM_occluded|PF16842.1|70,RRM_occluded|PF16842.1|1.3e+03,RRM_occluded|PF16842.1|1.3e+03 R_Transcript_52901:392-2857(+)
MAVSNDNNNISKKSSRICVKNLPQRLTLDDLKQFFSQKGELTDAKLILNKDGKSRVAYIGYRTEQEAEEAIKYFNRSYLKSSSITCEFSLSYGDPNIPRPWGQRSKEGNKLAGRKRSFAGSGANIGKNTPLKCNESDDPKFREFYHVVQPRSKTKFWADDVMQPTFNQDCQVNETVRKKQKKSHFNQDCQVNETVRKKPKKCISEFSFNKTVPEENWMDDGRSAQLQNTARDYILTDQKYFESKIRMDWSDSEIDIDENGIDFSQDHGGLCYEETNYRNLCCSLKHGNKVLQSSRLYVHNIDYATTEDELAGFFSEFGDVKKVHLVTDKETKRSKGFGYVFYSTPEEAARALEKLDHPIFQGRVLHVVPAETRHDLEKSVSEGKGKTYKQQRVEQRKTLESSGHTQAWNSLHMRSDTVVEYIARKYGVSKSNLLSCEADDLAVRFALWETQIIADTLKALTNAGVNVASLEAFSSGKSEGGKRSIHILLVKNLPFSSSKVDLLKMFGRFGSIEKIILPPTKTLALVFFLEPAEARVAFDCLRYKRYRDALLYLEWAPSTILSQDPTPNGDSKSTMVVGSQEVTKGSLEQIMQISEAEMDPEIAESRTVYVKNLNFKTTDESFGKHIRENMKEGKLLSSRIVKHLEMGKYFSSGYAFVEFDSMETANYICKALQGTVLDGHALSLQLHHPKEDKRVLKKAEDDRSSTKLKVGNVAFEATKKDLRQLFSPFGQVKSLRLPKGLEKHRGFAFVEYVTKQEAHNALKALSSTHLYGRRLVLERAKEGETLEEQRARTAAQFAGEGSRIEKPMEVTRERKIRSLLV*

Click here to download the sequence:
Link to NCBI Protein BLAST