Transcript Information: R_Transcript_52968.p1


Annotated TAIR IDAT3G55760.1
Annotated Gene Nameunknown protein; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G42430.2); Has 176 Blast hits to 125 proteins in 40 species: Archae - 0; Bacteria - 3; Metazoa - 19; Fungi - 9; Plants - 81; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:20700648-20702886 | Forward length=578
E-Value1.3E-144
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.414807840081
Replicate 22.3848804481764
Replicate 32.7039133465391
Condition 2: 8 Hour
Replicate 13.6537927649564
Replicate 23.6355108561393
Replicate 33.8809679722876
Condition 3: 24 Hour
Replicate 14.2438708238295
Replicate 22.5542838804232
Replicate 34.5335334874865


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_52968.p1 GENE.R_Transcript_52968~~R_Transcript_52968.p1 ORF type:complete len:449 (+),score=114.61 R_Transcript_52968:452-1798(+)
ATGGCGTCCCACGTAGCGCACCACCACGCCATTGTTAGACCTTCAAGACCAACTACTCACCCGCTTCTCCATTCCAATAATAAACCTAAACTCGTCACCATTTCAACAGAAACAGCCAGAAGAAGAGCAAGAAAGCATGCTGATCACCGAATTAGGGCTTGGAATGGTGATGAGTCGTACCTGGGGATGTGGAAGAGAGCTGTTGACAGAGAGAAGAGAGAGTCTGAGTTCCTCAAAATTGCCGAGAACTCCGATGGTGGTGCGGGTTCTGATGCTGAACCTGAGAAGGAGAGCCCTGAGGTTTTGGAAAGGAGGAGTCAGGAGTTCCAGAAGATTCTGGGAGTTTCTAGAGAGGAGAGAGATAAGATTCAGAGAATGCAGGTCATTGATCGCGCTGCTGCCGCCATTGCTGCTGCTCGCGCTCTCCTGAAAGAGATTCCTCCTCCTCCAGCTCCGTCTCACACTCAGAAGCTGAGGGCCGCAAATGTTGGCCCTCAATCTAGTGGCGGAGGAACAAACAGTGGACCCTTTCGTAGCCGTAAATCAAGAACTTCTGGAAATGGACCGCCAGGTCCAGACTTTTGGTCTTGGACACCACCCCCAGAGGATGATCCGAGTCAACACAATGACAATAGTGTACAGAAAGCCCCAAAAACATCTGGAAATCCATACCCAACAAACAATGTGCTAGAGAAGGAAAGGTCTGCAGATTTCCTCGTAATGCCTTTCGAGAGTAAACTCTCAGAGGGGGACCTTGTCCGTAATCTACCACCTTTTCAATCATTTATGGATGTGCATGAAGTGGAAGCTCCTAATAGTAGTCCTGAGGGCCCCGCCCCAGAAGAAGAAATTGGTGTTCAGTTTTCGACACATGCAGCAGAAGCTGTTGATGCTTTACTTAATATAGAAGAAAAACCATCTCATGGGATAAATCCTGATGGATCAAGGTGGTGGACGGAGACTGGGATTGAAGCAAGACCGGATGGTGTTGTTTGCCGATGGACACTAAACAGAGGTGTGACCGCTGATGGAGCAGTAGAGTGGGAAGAGAAGTATTGGGAGGCGGCTGACGAATTTGATTACAAGGAACTTGGATCAGAGAAGTCTGGACGTGATGCTGCGGGAAATATCTGGCATGAGTACTGGAAGGAAGCCATGTATCAGGAATGTGGCCTTTTACATATGGAAAAAACTGCGGACAAGTGGGGAAAGAATGGGAAGGGTGATGAATGGCAAGAGAAATGGTGGGAACATTATGATGCCTCAGGGAAGGCTGATAAGTGGGCACACAAGTGGTGTAGTATTGATCCCGATACTCCAGTTGAGGCTGGCCATGCTCATTTATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_52968.p1 GENE.R_Transcript_52968~~R_Transcript_52968.p1 ORF type:complete len:449 (+),score=114.61 R_Transcript_52968:452-1798(+)
MASHVAHHHAIVRPSRPTTHPLLHSNNKPKLVTISTETARRRARKHADHRIRAWNGDESYLGMWKRAVDREKRESEFLKIAENSDGGAGSDAEPEKESPEVLERRSQEFQKILGVSREERDKIQRMQVIDRAAAAIAAARALLKEIPPPPAPSHTQKLRAANVGPQSSGGGTNSGPFRSRKSRTSGNGPPGPDFWSWTPPPEDDPSQHNDNSVQKAPKTSGNPYPTNNVLEKERSADFLVMPFESKLSEGDLVRNLPPFQSFMDVHEVEAPNSSPEGPAPEEEIGVQFSTHAAEAVDALLNIEEKPSHGINPDGSRWWTETGIEARPDGVVCRWTLNRGVTADGAVEWEEKYWEAADEFDYKELGSEKSGRDAAGNIWHEYWKEAMYQECGLLHMEKTADKWGKNGKGDEWQEKWWEHYDASGKADKWAHKWCSIDPDTPVEAGHAHL*

Click here to download the sequence:
Link to NCBI Protein BLAST