Transcript Information: R_Transcript_53041.p1


Annotated TAIR IDAT3G25690.1
Annotated Gene NameHydroxyproline-rich glycoprotein family protein
Annotated Gene Symbol(s)CHUP1
Annotation TypeOrtholog
Chromosome Positionchr3:9354061-9357757 | Forward length=1004
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 117.340312906983
Replicate 27.2844307566748
Replicate 311.616988352335
Condition 2: 8 Hour
Replicate 17.0209469899754
Replicate 25.1338759329253
Replicate 38.2608350374414
Condition 3: 24 Hour
Replicate 113.891816006152
Replicate 27.9668996400657
Replicate 314.897039822613


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_53041.p1 GENE.R_Transcript_53041~~R_Transcript_53041.p1 ORF type:complete len:980 (+),score=277.21 R_Transcript_53041:484-3423(+)
ATGATAGTCAGGTTAGGCTTGGTGGTTGCCGCTTCTCTTGCAGCCTATACCGTTAGGCAGGTTAGCGTTAAAGCTCCGAAGGCTCGACGAAACTCTGCAGAAAATGGTGCCGGTGAGAATGAGGAGCAGGAGAAGGAAAAGCTTGAATACGCTAATGATGGCAACAAAGCGGAGGAAGAGGAAGAGGAAGTCAAATTGATAAGTGGAGAAATAAATCCTCGGATCAGTAGTACATTTGCAATAGGGGAGGATGAATTTGCGGAACTTTTTTCGGGGCAGATTGAATTTCCATTACCAGATGACACATTTGATGCAGAGAGAAGTTCAAAGGCGGACCGTCAGAGAGTATATGACGAGGAGATGGCAAATAACGCTAGTGAATTGGAAAGGTTGCGAAGCCTAGTGAAGGAATTGGAGGAAAGAGAAGTGAGACTAGAAGGAGAATTGCTGGAATATTATGGCATGAAAGAGCAGGAATCCGACATCATGGAGCTTCAAAGGCAGCTCAAGATCAAGACCGTGGAGATTGACATGCTTAAGGTTACGATTAACTCACTGCAGGCAGAAAGGAAGAAGCTTCAAGAAGAGCTCGAGGTGGGAGCTTCTGCTAGGAAGGAGCTTGATGTAGCGAGGAACAAGATTAAGGAGCTTCAGAGACAGATTCAGCTTCAAGCAAATCAGACTAAGGGCCAACTTTTGCTGCTTAAACAGCAAGTCAGTGGTTTGCAGGCTAAAGAGGAAGAAGCCTACAAGAGAGACTCTGACGTTGATAAGAAACTTAAAGCTGTGAAGCAATTGGAGATGGACGTAGCTGAGCTCAAGAGAAAAAACATCGAACTTCAGCATGAAAAGCGGGACTTGTTGGTCAAACTCGATGCTGCTCAAGCTAAAGCATCTGCACTGTCCAACATGTCTGAGACTGAGCTAGTTGCAAAGGCTAGGGAGGAGGTGAATGAGTTGAGGCATGCCAATGAGGACTTGCTAAAACAGGTTGAAGGACTTCAGATGAACAGATTCAGTGAAGTTGAAGAGTTGGTTTACTTAAGGTGGGTCAATGCATGCCTGAGATATGAGCTCCGGAACTACCAAACACCTGCTGGCAAGATGTCAGCTCGTGAGCTCAACAAGAATTTAAGCCCCAAGTCTCAAGAGAGGGCAAAGCAGCTGTTGTTGGAATATGCAGGGTCAGAACGTGGACAAGGGGACACAGATCTCGAAAGCAATTTCTCTCAACCATCCTCTCCAGGAAGTGAGGATTTCGACAATGTCTCAATAGACAGCTCCACAAGTAAATATAGCAGTCTCAGTCGGAGGCCAAGCTTGATTCAAAAGCTAAAGAAATGGGGCAAAAGCAAGGATGATTCAAGCGCTCTTTCGTCACCAGCTAGATCTCTAGCAGGAGGCTCACCAAGGAGCAGCAGGGCAAGCATGAGTCAGAGACAAAGGGGGCCACTTGAATCCTTGATGTTAAGGAATGCAAGTGACACTGTTGCAATAACCTCATTTGGGAAGGCAGAAGATGGATCAACTGACATCCCAGACCTCCCACAGATCAAAACAGGAGTTCCTTCTAGCGATGCACTGAATTCTGTGGCAGCATCATTCCAGGTAATGTCGAGATCAGTTGAAGGAGCCATAGATGAGAAATATCCTGCATACAAAGACAGACATAACTTTGCATTAGAGAGGGAAAAGCAGATTAAGGAAAAAGCAGAAAAGGCACGAGCTGAGAAGTTTGGTGACAAGTCAGGATTGAACCCAGATATTAAGATAAGAGATAAAGCTGCCTTGCCACCAAAGCTTGCTAAGATAAAGGAGAAGGCTAACATTGCTAGCGAGTCTGGTCCCCAATCTGCTGATAATAAGGAAGCTGAATCTCCTGCAGTGAGCAAAATGAAACTTGAACAGATTGAGAAAAGGCCTCCTAGGGTTCCAAGGCCGCCACCCAAAGCATCTGGAGGGAATGCTGCTGGTGGAAACGTGAATGTGTTGGGTGGAGTATCATCAGGGGGCCCACCCCCGCCACCACCACCTCCTCGTGCTCCTGGTGCACCACCTCCTCCACCTCCACTACCAGGTGGCCTGCCAAGGGGGGCAGGAGGCAGTGACAAAGTTCATCGAGCTCCAGAAGTTGTTGAATTTTATCAGAGCCTAATGAAACGCGAGGCAAAGAAAGAGACGCCAGCTTTGATGTCATCAACTTCTAGTACAGCTGATGCTAGGAGCAACATGATTGGCGAGATTGAGAATAGATCCTCCTTCCTCTTAGCAGTGAAAGCTGACGTGGAAACTCAAGGTGATTTTGTTCAGTCATTAGCAACTGAAGTCCGAGCAGCTACTTTTGCCGACATAGAAGATCTGGTTGCTTTTGTGAACTGGCTAGACGAAGAACTTTCCTTCTTGGTTGATGAGAGGGCAGTTCTCAAGCACTTTGATTGGCCGGAGGGGAAAGCAGATGCATTAAGAGAGGCTGCATTTGAATATCAAGATTTGATGAAGTTGGAAAAGCAGGTCACATCTTACGAAGATGATCCCAACATTCCCTGTGAAAAGGCTCTGAAAAAGATGTACTCATTACTCGAAAAGGTCGAGCAAAGTGTGTATGCATTACTACGTACACGAGATATGGCTATTTCACGATATAAGGAATTCGGCATTCCTGTCAATTGGTTGATGGACACAGGTGTTGTTGGCAAGATCAAGCTGTCATCAGTTCAGCTAGCAAAGAAGTACATGAAACGCGTAGCAACAGAGCTTGATGTGCTAAGTGGACATGAAAAGGAGCCTAATAGAGAATTCCTACTCCTTCAAGGCATCCGATTTGCTTTTCGTGTACATCAGTTTGCGGGTGGTTTTGATGCTGAAAGCATGAAGGCATTTGAGGACCTGAGAAACCGCGTGCACAATCAATCGAGTGAAGATAATAAGATGCAGTTGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_53041.p1 GENE.R_Transcript_53041~~R_Transcript_53041.p1 ORF type:complete len:980 (+),score=277.21 R_Transcript_53041:484-3423(+)
MIVRLGLVVAASLAAYTVRQVSVKAPKARRNSAENGAGENEEQEKEKLEYANDGNKAEEEEEEVKLISGEINPRISSTFAIGEDEFAELFSGQIEFPLPDDTFDAERSSKADRQRVYDEEMANNASELERLRSLVKELEEREVRLEGELLEYYGMKEQESDIMELQRQLKIKTVEIDMLKVTINSLQAERKKLQEELEVGASARKELDVARNKIKELQRQIQLQANQTKGQLLLLKQQVSGLQAKEEEAYKRDSDVDKKLKAVKQLEMDVAELKRKNIELQHEKRDLLVKLDAAQAKASALSNMSETELVAKAREEVNELRHANEDLLKQVEGLQMNRFSEVEELVYLRWVNACLRYELRNYQTPAGKMSARELNKNLSPKSQERAKQLLLEYAGSERGQGDTDLESNFSQPSSPGSEDFDNVSIDSSTSKYSSLSRRPSLIQKLKKWGKSKDDSSALSSPARSLAGGSPRSSRASMSQRQRGPLESLMLRNASDTVAITSFGKAEDGSTDIPDLPQIKTGVPSSDALNSVAASFQVMSRSVEGAIDEKYPAYKDRHNFALEREKQIKEKAEKARAEKFGDKSGLNPDIKIRDKAALPPKLAKIKEKANIASESGPQSADNKEAESPAVSKMKLEQIEKRPPRVPRPPPKASGGNAAGGNVNVLGGVSSGGPPPPPPPPRAPGAPPPPPPLPGGLPRGAGGSDKVHRAPEVVEFYQSLMKREAKKETPALMSSTSSTADARSNMIGEIENRSSFLLAVKADVETQGDFVQSLATEVRAATFADIEDLVAFVNWLDEELSFLVDERAVLKHFDWPEGKADALREAAFEYQDLMKLEKQVTSYEDDPNIPCEKALKKMYSLLEKVEQSVYALLRTRDMAISRYKEFGIPVNWLMDTGVVGKIKLSSVQLAKKYMKRVATELDVLSGHEKEPNREFLLLQGIRFAFRVHQFAGGFDAESMKAFEDLRNRVHNQSSEDNKMQL*

Click here to download the sequence:
Link to NCBI Protein BLAST