Transcript Information: R_Transcript_53060.p1


Annotated TAIR IDAT4G23330.1
Annotated Gene NameBEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 3A (TAIR:AT4G11420.1); Has 63 Blast hits to 55 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr4:12192136-12194745 | Forward length=270
E-Value1E-22
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 143.728316531808
Replicate 238.971550412985
Replicate 346.307865212366
Condition 2: 8 Hour
Replicate 138.226134485987
Replicate 239.573934769292
Replicate 342.310229071981
Condition 3: 24 Hour
Replicate 140.134871628289
Replicate 241.7304538721
Replicate 346.767253899342


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_53060.p1 GENE.R_Transcript_53060~~R_Transcript_53060.p1 ORF type:complete len:139 (+),score=34.22,DUF2365|PF10157.5|4e-10 R_Transcript_53060:228-644(+)
ATGGATGGTGATGAGGATGGGAAAGAGCAAGCTTCAATGGAGAATCCATCAAAGATGAAAGAACCCATTGATCGAGACTCCAATTCCTTCAACCAAGCTGATCTCTTGAAAGCCTTGGAGGTGGTAGAGAGAGACTCCCTCGCTATTGCCGACAGCTACACCTCCCTCTTCGCTTCTCTCCGATTAGCTCTCTCCCAGGTTACTAGCACTTCTGTTGATCATATCCAATGCTTCAGTGATGCGGCAGGCAACCTTCAAGAATCCGCTGTTGATGCAGCAATGAGAGGGAATCGTTTTATACATTCATGTATTAGGCTAAATGAGGAAATGAAGGGCATTGATGGATTAGCTTCACAATTAAAGGTTCTCAGGAGAAATGTGGATGCTCTGGACTCAGCAGTCACCCGACTTCTCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_53060.p1 GENE.R_Transcript_53060~~R_Transcript_53060.p1 ORF type:complete len:139 (+),score=34.22,DUF2365|PF10157.5|4e-10 R_Transcript_53060:228-644(+)
MDGDEDGKEQASMENPSKMKEPIDRDSNSFNQADLLKALEVVERDSLAIADSYTSLFASLRLALSQVTSTSVDHIQCFSDAAGNLQESAVDAAMRGNRFIHSCIRLNEEMKGIDGLASQLKVLRRNVDALDSAVTRLL*

Click here to download the sequence:
Link to NCBI Protein BLAST